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Report for CCDS18414.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18414.1 Public Mus musculus 4 C8b 23 108 98 CCDS HistoryNCBI Gene:110382Re-query CCDS DB by CCDS ID:18414.1Re-query CCDS DB by GeneID:110382See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18414.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000031663.9 ENSMUSP00000031663.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000031663.9Link to Ensembl Protein Viewer:ENSMUSP00000031663.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000031663Re-query CCDS DB by Protein ID:ENSMUSP00000031663
Original member Current member NCBI NM_133882.2 NP_598643.1 Accepted alive Link to Nucleotide Sequence:NM_133882.2Link to Protein Sequence:NP_598643.1Re-query CCDS DB by Nucleotide ID:NM_133882Re-query CCDS DB by Protein ID:NP_598643Link to BLAST:NP_598643.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_598643.1 589 Q8BH35-1 589 100% 0 0

Chromosomal Locations for CCDS 18414.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 104766398 104766486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 104774279 104774435 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 104780579 104780720 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 104782890 104783031 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 104784399 104784531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 104786801 104786998 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 104790475 104790715 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 104791795 104791923 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 104793228 104793391 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 104800335 104800488 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 104801338 104801406 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 104804009 104804160 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1770 nt):
ATGAAGATAGGGGCTCAGGTTTGGAGGGCACTGGCAAAGTCGTGTCTCCTCTGTGCTACTCTGGGATGTC
TCCATTTCCCTGGTTCCAGAGGTGGGAAGCCCGATTTCTTTGAGACAAAGGCAGTCAATGGGAGCCTTGT
CAAGAGCAGACCAGTACGGAGTGTGGCGGAAGCCCCAGCACCTATTGACTGTGAGCTATCCACCTGGTCT
TCCTGGACTGCATGTGACCCCTGTCAGAAGAAAAGGTACAGACATACTTACTTGCTCCGGCCCTCTCAGT
TCTATGGGGAATTGTGTGACTTGTCCGACAAGGAAGTTGAAGACTGTGTTACCAACCAACCCTGCAGGAG
TCAAGTACGATGTGAAGGCTTTGTGTGTGCACAGACAGGGAGGTGTGTGAATCGCAGACTCCTTTGCAAT
GGGGACAATGACTGTGGAGACCAATCAGATGAAGCCAACTGTAGGAGGATTTATAAAAACTGTCAACGGG
AGATGGAGCAGTACTGGGCAATTGACAGGCTGGCCAGTGGGATAAATCTGTTCACAAACACTTTTGAGGG
CCCAGTTCTCGATCACCGGTATTATGCTGGTGGATGCTCCCCCCACTACATCCTGGACACCAACTTTAGG
AAGCCATACAACGTAGAAAGCTACACCCCACAGACCAAATGTGAATATGAATTCACACTTACAGAATATG
AATCATATTCAGATTTTGAACGTCTAGTGATAGAAAAGAAAACCCACATGTTTAATTTCACGTCTGGTTT
TAAAGTGGATGGCGTTATGGATCTTGGAATTAAAGTAGAAAGCAACGAAGGCAAAAATTATGTGACCAGA
ACCAAACGCTTCGCCCACACTCAAAGCAAGTTCCTCCACGCGCGCTCTGTCCTTGAAGTGGCACATTACA
AGCTGAAGTCTAGAAGCCTCATGCTCCATTATGAATTCCTTCAGAGGGTCAAGAGCCTGCCCCTGGAGTA
TAGCTATGGGGAATACCGAGATCTTCTTCGTGACTTCGGGACCCATTTCATCACTGAAGCCGTACTTGGG
GGCATCTACGAGTACACGCTTATCATGAACAAAGACGCCATGGAGCAAGGAGACTACACTCTTAGCCATG
TTACTGCCTGTGCTGGAGGAAGTTTCGGTATTGGTGGTATGGTCTATAAAGTCTATGTCAAAGTGGGCGT
TTCCGCAAAGAAATGCAGTGACATTATGAAAGAAATCAACGAAAGAAATAAGAGGAGCACCATGGTAGAA
GACTTGGTAGTTCTTGTGAGAGGAGGGACAAGTGAGGATATCACTGCCTTGGCATACAAGGAGCTACCAA
CCCCTGAACTGATGGAGGCATGGGGCGATGCTGTGAAGTACAACCCAGCAATCATTAAGATCAAGGCTGA
GCCCCTGTATGAGCTTGTGACAGCCACAGACTTTGCATACTCCAGCACAGTGAAGCAGAACTTAAAGAAG
GCACTAGAAGAATTCCAGAGTGAGGTCAGCTCCTGCCGCTGTGCTCCTTGCAGAGGGAATGGAGTCCCTG
TCCTGAAAGGATCCCGCTGTGAGTGCATCTGCCCCGGTGGCTTCCAAGGCACAGCCTGTGAGGTTACCTA
TCGGAAAGACATCCCCATAGATGGGAAGTGGAGTTGCTGGTCTGACTGGTCTGCATGCTCTGGAGGACAC
AAAACAAGACACAGGCAGTGCAACAATCCAGCCCCTCACAAAGGAGGCAGCCCCTGTTCGGGTCCTGCTT
CCGAAACACTCAACTGTTAA

Translation (589 aa):
MKIGAQVWRALAKSCLLCATLGCLHFPGSRGGKPDFFETKAVNGSLVKSRPVRSVAEAPAPIDCELSTWS
SWTACDPCQKKRYRHTYLLRPSQFYGELCDLSDKEVEDCVTNQPCRSQVRCEGFVCAQTGRCVNRRLLCN
GDNDCGDQSDEANCRRIYKNCQREMEQYWAIDRLASGINLFTNTFEGPVLDHRYYAGGCSPHYILDTNFR
KPYNVESYTPQTKCEYEFTLTEYESYSDFERLVIEKKTHMFNFTSGFKVDGVMDLGIKVESNEGKNYVTR
TKRFAHTQSKFLHARSVLEVAHYKLKSRSLMLHYEFLQRVKSLPLEYSYGEYRDLLRDFGTHFITEAVLG
GIYEYTLIMNKDAMEQGDYTLSHVTACAGGSFGIGGMVYKVYVKVGVSAKKCSDIMKEINERNKRSTMVE
DLVVLVRGGTSEDITALAYKELPTPELMEAWGDAVKYNPAIIKIKAEPLYELVTATDFAYSSTVKQNLKK
ALEEFQSEVSSCRCAPCRGNGVPVLKGSRCECICPGGFQGTACEVTYRKDIPIDGKWSCWSDWSACSGGH
KTRHRQCNNPAPHKGGSPCSGPASETLNC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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