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Report for CCDS18441.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18441.1 Public Mus musculus 4 Magoh 23 108 98 CCDS HistoryNCBI Gene:17149Re-query CCDS DB by CCDS ID:18441.1Re-query CCDS DB by GeneID:17149See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18441.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030348.5 ENSMUSP00000030348.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030348.5Link to Ensembl Protein Viewer:ENSMUSP00000030348.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000030348Re-query CCDS DB by Protein ID:ENSMUSP00000030348
Original member Current member NCBI NM_001282737.1 NP_001269666.1 Accepted alive Link to Nucleotide Sequence:NM_001282737.1Link to Protein Sequence:NP_001269666.1Re-query CCDS DB by Nucleotide ID:NM_001282737Re-query CCDS DB by Protein ID:NP_001269666Link to BLAST:NP_001269666.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001269666.1 146 P61327 146 100% 0 0

Chromosomal Locations for CCDS 18441.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 107879858 107879945 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 107880893 107880951 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 107883068 107883178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 107884917 107884999 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 107887177 107887276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (441 nt):
ATGGAGAGTGACTTTTACCTGCGTTACTACGTGGGCCACAAAGGCAAGTTCGGTCATGAGTTCCTGGAGT
TTGAATTCCGACCTGACGGTAAATTGCGATACGCCAACAACAGCAATTACAAAAATGACGTCATGATCAG
GAAAGAGGCTTATGTGCATAAAAGTGTGATGGAAGAGTTAAAGAGAATTATTGATGACAGTGAAATCACC
AAAGAAGATGATGCTCTGTGGCCCCCTCCTGATCGCGTGGGCCGGCAGGAGCTTGAAATTGTCATTGGAG
ATGAACACATTTCTTTCACAACATCAAAAATTGGTTCCCTTATTGATGTCAACCAGTCCAAGGATCCGGA
AGGCTTGCGAGTATTTTATTATCTTGTCCAGGACCTGAAGTGTTTAGTCTTCAGTCTGATTGGATTACAC
TTCAAGATTAAACCAATCTAG

Translation (146 aa):
MESDFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDVMIRKEAYVHKSVMEELKRIIDDSEIT
KEDDALWPPPDRVGRQELEIVIGDEHISFTTSKIGSLIDVNQSKDPEGLRVFYYLVQDLKCLVFSLIGLH
FKIKPI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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