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Report for CCDS18464.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18464.1 Public Mus musculus 4 Rnf11 23 108 98 CCDS HistoryNCBI Gene:29864Re-query CCDS DB by CCDS ID:18464.1Re-query CCDS DB by GeneID:29864See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18464.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030284.9 ENSMUSP00000030284.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030284.9Link to Ensembl Protein Viewer:ENSMUSP00000030284.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000030284Re-query CCDS DB by Protein ID:ENSMUSP00000030284
Original member Current member EBI ENSMUST00000064167.7 ENSMUSP00000063798.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000064167.7Link to Ensembl Protein Viewer:ENSMUSP00000063798.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000064167Re-query CCDS DB by Protein ID:ENSMUSP00000063798
Original member NCBI NM_013876.3 NP_038904.1 Updated not alive Link to Nucleotide Sequence:NM_013876.3Link to Protein Sequence:NP_038904.1Re-query CCDS DB by Nucleotide ID:NM_013876Re-query CCDS DB by Protein ID:NP_038904
Current member NCBI NM_013876.4 NP_038904.1 Accepted alive Link to Nucleotide Sequence:NM_013876.4Link to Protein Sequence:NP_038904.1Re-query CCDS DB by Nucleotide ID:NM_013876Re-query CCDS DB by Protein ID:NP_038904Link to BLAST:NP_038904.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_038904.1 154 Q9QYK7 154 100% 0 0

Chromosomal Locations for CCDS 18464.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 109454251 109454422 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 109456898 109457067 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 109476110 109476232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (465 nt):
ATGGGGAACTGCCTCAAATCCCCGACTTCGGATGACATCTCCCTGCTTCACGAGTCTCAGTCCGACCGGG
CTAGCTTTGGCGAGGGGACGGAGCCAGATCAGGAGCCGCCGCCGCCATATCAGGAACAAGTTCCTGTTCC
CATCTATCATCCGACACCTAGCCAGACTCGGCTAGCAACTCAGCTGACTGAAGAGGAACAAATTAGAATA
GCTCAAAGAATAGGCCTTATACAGCATCTGCCTAAAGGAGTTTATGACCCTGGAAGAGATGGATCAGAAA
AAAAGATCCGAGAGTGTGTGATCTGTATGATGGACTTTGTTTATGGGGACCCAATTCGATTTCTGCCGTG
CATGCACATCTATCACCTGGACTGTATAGATGACTGGTTGATGAGATCCTTCACGTGCCCCTCCTGCATG
GAGCCAGTGGATGCAGCACTGCTTTCATCCTATGAGACTAATTGA

Translation (154 aa):
MGNCLKSPTSDDISLLHESQSDRASFGEGTEPDQEPPPPYQEQVPVPIYHPTPSQTRLATQLTEEEQIRI
AQRIGLIQHLPKGVYDPGRDGSEKKIRECVICMMDFVYGDPIRFLPCMHIYHLDCIDDWLMRSFTCPSCM
EPVDAALLSSYETN


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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