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Report for CCDS18502.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18502.1 Public Mus musculus 4 Nsun4 23 108 98 CCDS HistoryNCBI Gene:72181Re-query CCDS DB by CCDS ID:18502.1Re-query CCDS DB by GeneID:72181See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18502.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030475.2 ENSMUSP00000030475.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030475.2Link to Ensembl Protein Viewer:ENSMUSP00000030475.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000030475Re-query CCDS DB by Protein ID:ENSMUSP00000030475
Original member Current member NCBI NM_028142.5 NP_082418.1 Accepted alive Link to Nucleotide Sequence:NM_028142.5Link to Protein Sequence:NP_082418.1Re-query CCDS DB by Nucleotide ID:NM_028142Re-query CCDS DB by Protein ID:NP_082418Link to BLAST:NP_082418.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082418.1 381 Q9CZ57-1 381 100% 0 0

Chromosomal Locations for CCDS 18502.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 116034035 116034311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 116035752 116035876 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 116040069 116040229 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 116044685 116044839 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 116048330 116048664 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 116053684 116053776 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1146 nt):
ATGGCTGCGCCCGTCTTAAGATGTGTTCGGAAGCTGCTGAAGCTCGTGGACTTCACGCCGGTCCCGCGGA
GATATCGATATAAGAAGAAATGGGCTACCACAGAACCACAATTCACGGCCAGTCGGCTTGCTCTGCAGAA
TTTTGACATGACCTACAGTGTACAGTTTGGGGATCTTTGGCCATCAATCCGTGTTAGTCTTCTCTCAGAG
CAGAAGTATGGTGCATTGGTCAATAATTTTGCTGCTTGGGATAGTGTGAGTGCTAAGCTGGAGCAGCTGA
GTGCCAAGGACTTCGTCAGTGAAGCCATCTCTCACCAGAAACTGGAGCCTGAGAGTGGCCTCTCTCCAAC
TCCATCCCTGGACTGCAGCCCAAATCTTCGATGCTTCACTTTTTCCAGAGGGGACGTCAGCCGCTTTCCT
CCTGCCAGACTTGGCAGCCTGGGTCTCATGGACTACTACCTGATGGATGCTGCCTCCTTGCTCCCTGTCC
TGGCTCTTGGTCTGCAGCATGGAGACACTGTGCTTGATCTGTGTGCTGCTCCTGGGGGCAAAACGCTGGC
ATTACTTCAGACGGGTTGTTGCCGTAATCTAGCTGCCAACGACCTCTCCACTTCCCGAACAGGCAGACTG
CAGAAGGTCCTTCACAGTTATGTGCCTCAAGATATTAGGGAAGGGAACCAAGTCCGAGTTACCTCATGGG
ATGGCAGGAAGTGGGGAGAACTGGAGGGGGACACCTATGATAGGGTGTTAGTAGATGTGCCATGTACCAC
GGACCGCCATTCCCTTCATGAGGAAGAGAACAACATCTTTCAGCGGTCAAGGAAGAAGGAGCGACAGATG
TTGCCTATGCTGCAGGTGCAGCTTCTTGCGGCTGGACTCCTTGCCACCAAACCAGGAGGTCACGTTGTCT
ATTCAACTTGCTCACTGTCTCACTTACAGAATGAGTATGTGGTGCAAGGTGCCATTGAGCTTCTGGCCAA
TCAATACAACATCAAGGTTCAAGTGGAAGACCTGTCTCACTTCCGAAAGCTTTTCATGGACACATTCTGT
TTCTTCCCATCCTGCCAGGTTGGGGAGCTGGTAATACCAAACCTCATGGTCAATTTTGGACCTATGTACT
TCTGCAAACTGCATAGGCTGCCATAG

Translation (381 aa):
MAAPVLRCVRKLLKLVDFTPVPRRYRYKKKWATTEPQFTASRLALQNFDMTYSVQFGDLWPSIRVSLLSE
QKYGALVNNFAAWDSVSAKLEQLSAKDFVSEAISHQKLEPESGLSPTPSLDCSPNLRCFTFSRGDVSRFP
PARLGSLGLMDYYLMDAASLLPVLALGLQHGDTVLDLCAAPGGKTLALLQTGCCRNLAANDLSTSRTGRL
QKVLHSYVPQDIREGNQVRVTSWDGRKWGELEGDTYDRVLVDVPCTTDRHSLHEEENNIFQRSRKKERQM
LPMLQVQLLAAGLLATKPGGHVVYSTCSLSHLQNEYVVQGAIELLANQYNIKVQVEDLSHFRKLFMDTFC
FFPSCQVGELVIPNLMVNFGPMYFCKLHRLP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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