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Report for CCDS1854.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1854.2 Public Homo sapiens 2 CFAP36 24 110 108 CCDS HistoryNCBI Gene:112942Re-query CCDS DB by CCDS ID:1854.2Re-query CCDS DB by GeneID:112942See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 1854.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000349456.9 ENSP00000295117.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000349456.9Link to Ensembl Protein Viewer:ENSP00000295117.4Re-query CCDS DB by Nucleotide ID:ENST00000349456Re-query CCDS DB by Protein ID:ENSP00000295117
Original member Current member NCBI NM_080667.7 NP_542398.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_080667.7Link to Protein Sequence:NP_542398.3Re-query CCDS DB by Nucleotide ID:NM_080667Re-query CCDS DB by Protein ID:NP_542398Link to BLAST:NP_542398.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_542398.3 342 Q96G28-1 342 100% 0 0

Chromosomal Locations for CCDS 1854.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 55519802 55519916 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 55522102 55522166 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 55523721 55523822 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 55528878 55528992 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 55533873 55533960 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 55535712 55535763 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 55537483 55537585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 55543938 55544074 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 55544220 55544369 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 55544907 55545008 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1029 nt):
ATGGCTGCGGAAGAAGAAGACGAGGTGGAGTGGGTAGTGGAGAGCATCGCGGGGTTCCTGCGAGGCCCAG
ACTGGTCCATCCCCATCTTGGACTTTGTGGAACAGAAATGTGAAGTTTTTGATGATGAAGAAGAAAGCAA
ATTGACCTATACAGAGATTCATCAGGAATACAAAGAACTAGTTGAAAAGCTGTTAGAAGGTTACCTCAAA
GAAATTGGAATTAATGAAGATCAATTTCAAGAAGCATGCACTTCTCCTCTTGCAAAGACCCATACATCAC
AGGCCATTTTGCAACCTGTGTTGGCAGCAGAAGATTTTACTATCTTTAAAGCAATGATGGTCCAGAAAAA
CATTGAAATGCAGCTGCAAGCCATTCGAATAATTCAAGAGAGAAATGGTGTATTACCTGACTGCTTAACC
GATGGCTCTGATGTGGTCAGTGACCTTGAACACGAAGAGATGAAAATCCTGAGGGAAGTTCTTAGAAAAT
CAAAAGAGGAATATGACCAGGAAGAAGAAAGGAAGAGGAAAAAACAGTTATCAGAGGCTAAAACAGAAGA
GCCCACAGTGCATTCCAGTGAAGCTGCAATAATGAATAATTCCCAAGGGGATGGTGAACATTTTGCACAC
CCACCCTCAGAAGTTAAAATGCATTTTGCTAATCAGTCAATAGAACCTTTGGGAAGAAAAGTGGAAAGGT
CTGAAACTTCCTCCCTCCCACAAAAAGACCTGAAGATTCCTGGCTTAGAGCATGCGAGCATTGAAGGACC
AATAGCAAACTTATCAGTACTTGGAACAGAAGAACTTCGGCAACGAGAACACTATCTCAAGCAGAAGAGA
GATAAGTTGATGTCCATGAGAAAGGATATGAGGACTAAACAGATACAAAATATGGAGCAGAAAGGAAAAC
CCACTGGGGAGGTAGAGGAAATGACAGAGAAACCAGAAATGACAGCAGAGGAGAAGCAAACATTACTAAA
GAGGAGATTGCTTGCAGAGAAACTCAAAGAAGAAGTTATTAATAAGTAA

Translation (342 aa):
MAAEEEDEVEWVVESIAGFLRGPDWSIPILDFVEQKCEVFDDEEESKLTYTEIHQEYKELVEKLLEGYLK
EIGINEDQFQEACTSPLAKTHTSQAILQPVLAAEDFTIFKAMMVQKNIEMQLQAIRIIQERNGVLPDCLT
DGSDVVSDLEHEEMKILREVLRKSKEEYDQEEERKRKKQLSEAKTEEPTVHSSEAAIMNNSQGDGEHFAH
PPSEVKMHFANQSIEPLGRKVERSETSSLPQKDLKIPGLEHASIEGPIANLSVLGTEELRQREHYLKQKR
DKLMSMRKDMRTKQIQNMEQKGKPTGEVEEMTEKPEMTAEEKQTLLKRRLLAEKLKEEVINK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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