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Report for CCDS18589.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18589.1 Public Mus musculus 4 Scmh1 23 108 98 CCDS HistoryNCBI Gene:29871Re-query CCDS DB by CCDS ID:18589.1Re-query CCDS DB by GeneID:29871See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18589.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000000087.12 ENSMUSP00000000087.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000000087.12Link to Ensembl Protein Viewer:ENSMUSP00000000087.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000000087Re-query CCDS DB by Protein ID:ENSMUSP00000000087
Original member Current member EBI ENSMUST00000106298.9 ENSMUSP00000101905.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106298.9Link to Ensembl Protein Viewer:ENSMUSP00000101905.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000106298Re-query CCDS DB by Protein ID:ENSMUSP00000101905
Original member NCBI NM_001355423.1 NP_001342352.1 Removed not alive Link to Nucleotide Sequence:NM_001355423.1Link to Protein Sequence:NP_001342352.1Re-query CCDS DB by Nucleotide ID:NM_001355423Re-query CCDS DB by Protein ID:NP_001342352Link to BLAST:NP_001342352.1
Current member NCBI NM_001379185.1 NP_001366114.1 Accepted alive Link to Nucleotide Sequence:NM_001379185.1Link to Protein Sequence:NP_001366114.1Re-query CCDS DB by Nucleotide ID:NM_001379185Re-query CCDS DB by Protein ID:NP_001366114Link to BLAST:NP_001366114.1
Original member NCBI NM_013883.2 NP_038911.1 Updated not alive Link to Nucleotide Sequence:NM_013883.2Link to Protein Sequence:NP_038911.1Re-query CCDS DB by Nucleotide ID:NM_013883Re-query CCDS DB by Protein ID:NP_038911
Current member NCBI NM_013883.3 NP_038911.1 Accepted alive Link to Nucleotide Sequence:NM_013883.3Link to Protein Sequence:NP_038911.1Re-query CCDS DB by Nucleotide ID:NM_013883Re-query CCDS DB by Protein ID:NP_038911Link to BLAST:NP_038911.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001366114.1 664 Q8K214-2 664 100% 0 0
NP_038911.1 664 Q8K214-2 664 100% 0 0

Chromosomal Locations for CCDS 18589.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 120462080 120462155 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 120463075 120463145 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 120468235 120468469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 120478002 120478090 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 120483590 120483833 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 120505284 120505513 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 120508086 120508212 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 120515074 120515274 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 120516886 120517077 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 120522455 120522649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 120524998 120525063 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 120528156 120528298 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 120529134 120529259 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1995 nt):
ATGCTGGTTTGCTACAGTGTTTTAGCTTGTGAGAGTCTCTGGGACCTTCCCTGCTCCATCATGGGGTCAC
CTCTAGGTCATTTTACCTGGGACAAATACCTAAAAGAAACATGTTCAGTCCCAGCGCCTGTCCATTGCTT
CAAGCAGTCCTACACACCTCCAAGTAATGAGTTCAAGATCAGCATGAAATTGGAAGCACAGGATCCCAGG
AACACCACATCCACCTGTATTGCCACGGTCGTTGGATTGACAGGTGCCCGACTTCGTCTGCGCCTTGATG
GCAGTGACAACAAGAATGACTTCTGGAGACTGGTTGACTCCTCTGAAATCCAGCCAATTGGAAACTGTGA
GAAGAATGGCGGGATGCTGCAGCCCCCTCTAGGATTTCGGCTGAATGCCTCCTCTTGGCCCATGTTCCTT
TTGAAGACACTAAATGGAGCAGAGATGGCTCCCATCAAGATTTTCCATAAGGAGCCACCATCACCTTCCC
ACAACTTCTTCAAAATGGGAATGAAGTTAGAAGCTGTAGACAGAAAGAACCCTCATTTCATTTGCCCAGC
CACTATTGGAGAAGTTCGAGGCGCAGAAGTGCTAGTCACCTTTGATGGGTGGCGAGGCGCATTTGACTAC
TGGTGCCGCTTTGACTCCCGGGACATCTTTCCTGTGGGCTGGTGTTCTTTGACTGGAGATAACCTGCAGC
CACCTGGCACCAAAGTTGTGATTCCAAAGAATCCGTCCCCTTCATCTGATGTGAGCACTGAGAAGCCCAG
CATCCACAGCACCAAAACTGTCTTGGAGCATCAGCCAGGGCAGAGGGGCCGCAAACCAGGAAAGAAGCGG
GGCCGAACACCCAAGATCCTTATTCCCCATCCCACCTCTACCCCATCCAAGTCAGCTGAACCTTTGAAAT
TTCCAAAGAAGAGAGGTCCCAAGCCTGGCAGTAAGAGGAAACCTCGGACTTTGCTGAGCCCACCACCCAC
CTCACCAACAACCAGCACCCCTGAACCGGACACCAGCACTGTTCCTCAAGATGCTGCCACCGTCCCAAGT
TCAGCCATGCAGGCCCCCACAGTTTGTATCTACTTGAACAAGAGCGGCAGCACGGGCCCCCACCTGGATA
AGAAGAAGATCCAACAACTCCCTGACCATTTTGGGCCAGCCCGTGCCTCTGTGGTGCTGCAGCAGGCTGT
CCAGGCTTGCATTGACTGTGCTTATCACCAGAAAACTGTCTTCAGCTTCCTCAAACAGGGCCACGGCGGT
GAAGTCATTTCAGCCGTGTTTGACCGGGAACAGCACACTCTGAACCTCCCAGCAGTCAACAGCATCACCT
ATGTCCTCCGTTTCCTGGAGAAGCTCTGCCACAACCTTCGAAGTGACAATCTGTTTGGCAACCAGCCCTT
TACACAGACTCACTTATCACTCACTGCCACAGAGTATAATCACAACCACGACAGGTACCTACCAGGTGAA
ACCTTTGTCCTGGGGAATAGCCTGGCCCGGTCCTTGGAGACACACTCAGACCTGATGGATTCTGCCTTGA
AGCCTGCCAACCTTGTCAGCACATCCCAAAACCTTCGGACTCCTGGCTATCGGCCCTTGCTTCCCTCCTG
TGGCCTCCCATTAAGCACTGTCTCTGCTGTGCGTAGGCTCTGCTCTAAGGGAGTGTTAAAAGGAAAAAAG
GAAAGAAGGGATGTGGAGTCATTTTGGAAACTAAATCATTCCCCAGGGTCAGATCGACATCTGGAGAGCC
GAGATCCCCCTCGCCTGAGTGGCCGGGACCCCTCCTCATGGACAGTGGAGGATGTGATGCAGTTTGTCCG
GGAAGCCGATCCTCAGCTTGGATCCCATGCTGACCTCTTCCGAAAACATGAAATCGATGGCAAGGCCCTG
CTCCTGCTGCGCAGTGACATGATGATGAAGTACATGGGCCTGAAGCTGGGGCCCGCCCTCAAGCTCTCCT
TTCACATTGACCGGCTGAAGCAGGGCAAGTTCTGA

Translation (664 aa):
MLVCYSVLACESLWDLPCSIMGSPLGHFTWDKYLKETCSVPAPVHCFKQSYTPPSNEFKISMKLEAQDPR
NTTSTCIATVVGLTGARLRLRLDGSDNKNDFWRLVDSSEIQPIGNCEKNGGMLQPPLGFRLNASSWPMFL
LKTLNGAEMAPIKIFHKEPPSPSHNFFKMGMKLEAVDRKNPHFICPATIGEVRGAEVLVTFDGWRGAFDY
WCRFDSRDIFPVGWCSLTGDNLQPPGTKVVIPKNPSPSSDVSTEKPSIHSTKTVLEHQPGQRGRKPGKKR
GRTPKILIPHPTSTPSKSAEPLKFPKKRGPKPGSKRKPRTLLSPPPTSPTTSTPEPDTSTVPQDAATVPS
SAMQAPTVCIYLNKSGSTGPHLDKKKIQQLPDHFGPARASVVLQQAVQACIDCAYHQKTVFSFLKQGHGG
EVISAVFDREQHTLNLPAVNSITYVLRFLEKLCHNLRSDNLFGNQPFTQTHLSLTATEYNHNHDRYLPGE
TFVLGNSLARSLETHSDLMDSALKPANLVSTSQNLRTPGYRPLLPSCGLPLSTVSAVRRLCSKGVLKGKK
ERRDVESFWKLNHSPGSDRHLESRDPPRLSGRDPSSWTVEDVMQFVREADPQLGSHADLFRKHEIDGKAL
LLLRSDMMMKYMGLKLGPALKLSFHIDRLKQGKF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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