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Report for CCDS18643.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18643.1 Public Mus musculus 4 Eva1b 23 108 98 CCDS HistoryNCBI Gene:230752Re-query CCDS DB by CCDS ID:18643.1Re-query CCDS DB by GeneID:230752See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 18643.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000052876.2 ENSMUSP00000054141.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000052876.2Link to Ensembl Protein Viewer:ENSMUSP00000054141.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000052876Re-query CCDS DB by Protein ID:ENSMUSP00000054141
Original member Current member EBI ENSMUST00000106150.2 ENSMUSP00000101756.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106150.2Link to Ensembl Protein Viewer:ENSMUSP00000101756.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000106150Re-query CCDS DB by Protein ID:ENSMUSP00000101756
Original member Current member EBI ENSMUST00000106152.2 ENSMUSP00000101758.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106152.2Link to Ensembl Protein Viewer:ENSMUSP00000101758.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000106152Re-query CCDS DB by Protein ID:ENSMUSP00000101758
Original member Current member NCBI NM_172145.3 NP_742157.1 Accepted alive Link to Nucleotide Sequence:NM_172145.3Link to Protein Sequence:NP_742157.1Re-query CCDS DB by Nucleotide ID:NM_172145Re-query CCDS DB by Protein ID:NP_742157Link to BLAST:NP_742157.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_742157.1 164 Q8K2Y3 164 100% 0 0

Chromosomal Locations for CCDS 18643.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 126148979 126149045 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 126149236 126149663 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (495 nt):
ATGGATGCCCCAAGAAGGGACATGGAGCTACTCAGCAACAGCCTGGCAGCCTATGCGCACATCAGAGCTA
ACCCCGAGAGCTTCGGCCTCTACTTCGTGCTTGGCGTCTGCTTCGGCCTGCTGCTGACCCTATGCCTGCT
GGTCATCAGCATCTCCTGCGCGCCTCGCTCGCGACCCCGGACCCCTGCTCCGCGCCGGGACCCCCGGAGC
AGCACCCTAGAGCCGGAAGACGAGGACGATGAGGAAGATGAGGACACCATGACGAGGCTGGGTCCCGATG
ACACGCTGCAGGGCCAGGAGCTGTCCACAGAGCCCGACGGGCCCCTTAGTGTCAATGTCTTCACGTCAGC
AGAGGAGCTAGAGCGGGCACAGCGGCTGGAGGAGCGTGAACGAATCCTGCGGGAGATCTGGCGCACTGGG
CAGCCAGACCTGCTGGGCAGTGGCACGCTCGGGCCCGGAGCCACGGCCACGCTGGGACGAATGCACTATT
ACTGA

Translation (164 aa):
MDAPRRDMELLSNSLAAYAHIRANPESFGLYFVLGVCFGLLLTLCLLVISISCAPRSRPRTPAPRRDPRS
STLEPEDEDDEEDEDTMTRLGPDDTLQGQELSTEPDGPLSVNVFTSAEELERAQRLEERERILREIWRTG
QPDLLGSGTLGPGATATLGRMHYY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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  VEGA Genome Browser

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