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Report for CCDS18730.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18730.1 Public Mus musculus 4 Eya3 23 108 98 CCDS HistoryNCBI Gene:14050Re-query CCDS DB by CCDS ID:18730.1Re-query CCDS DB by GeneID:14050See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 18730.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000079157.10 ENSMUSP00000078157.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000079157.10Link to Ensembl Protein Viewer:ENSMUSP00000078157.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000079157Re-query CCDS DB by Protein ID:ENSMUSP00000078157
Original member NCBI NM_010166.3 NP_034296.2 Updated not alive Link to Nucleotide Sequence:NM_010166.3Link to Protein Sequence:NP_034296.2Re-query CCDS DB by Nucleotide ID:NM_010166Re-query CCDS DB by Protein ID:NP_034296
Current member NCBI NM_010166.4 NP_034296.2 Accepted alive Link to Nucleotide Sequence:NM_010166.4Link to Protein Sequence:NP_034296.2Re-query CCDS DB by Nucleotide ID:NM_010166Re-query CCDS DB by Protein ID:NP_034296Link to BLAST:NP_034296.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034296.2 510 P97480-1 510 100% 0 0

Chromosomal Locations for CCDS 18730.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 132661910 132661938 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 132667155 132667234 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 132670189 132670255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 132672896 132673032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 132689705 132689790 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 132692962 132693145 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 132694747 132694883 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 132699030 132699113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 132701021 132701110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 132704352 132704410 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 132706963 132707123 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 132709945 132710059 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 132711842 132711963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 132719212 132719312 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 132721279 132721359 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1533 nt):
ATGCAGGAACCAAGAGAACAGACTTTAAGTCAAGTAAACAACCCAGATGCCAGTGATGAGAAGCCTGAGA
CATCCAGCCTTGCGTCAAATCTCAGCATGTCAGAGGAAATTATGACATGCACCGATTACATCCCTCGCTC
ATCCAATGATTATACCTCACAAATGTATTCTGCAAAACCTTATGCACACATCCTCTCAGTTCCTGTTTCG
GAAACCACTTATCCTGGGCAGACTCAGTACCAGACACTGCAGCAATCTCAACCCTACGCTGTCTACCCTC
AGGCAACCCAAACTTACGGACTACCTCCTTTCGCTTCAAGCACAAATGCCAGCCTGATACCCACTTCATC
TGCAATTGCCAATATTCCAGCAGCAGCTGTGGCCAGCATCTCAAACCAGGATTATCCCACCTATACTATT
CTTGGACAGAATCAGTACCAGGCCTGCTACCCCAGTTCCAGCTTTGGAGTCACAGGTCAGACTAACAGTG
ATGCTGAGACCACAACATTAGCAGCTACAACATACCAGACGGAGAAGCCTAGTGCTATGGTGCCTGCACC
AGCCACACAGAGGCTTCCCTCCGACTCCTCTGCAAGCCCACCTTTGTCCCAGACTACACCAAATAAAGAT
GCTGATGATCAGGCCAGGAAAAACATGACTGTCAAGAACCGGGGCAAGAGGAAAGCTGATGCCAGCTCTT
CCCAGGACAGTGAATTGGAACGGGTATTTCTCTGGGACTTGGACGAAACCATCATCATCTTTCATTCCCT
TCTCACTGGATCCTATGCTCAGAAGTATGGAAAGGACCCAACAGTAGTAATTGGCTCAGGTTTAACCATG
GAAGAAATGATTTTTGAAGTGGCTGATACACATCTATTTTTCAATGACTTAGAGGAGTGTGACCAGGTGC
ATGTGGAAGATGTGGCTTCTGATGACAATGGCCAGGATTTGAGCAACTACAGTTTCTCCACAGATGGTTT
CAGTGGTTCAGGAGGCAGTGGTAGCCACGGCTCATCTGTGGGCGTTCAGGGAGGTGTGGACTGGATGAGG
AAACTGGCCTTTCGCTACCGAAAAGTGAGGGAAATCTACGACAAGCATAAAAGCAATGTGGGTGGCCTCC
TCAGCCCCCAGAGGAAGGAAGCACTGCAGAGACTCAGAGCAGAGATCGAGGTGCTGACGGACTCCTGGTT
AGGAACTGCGCTCAAGTCCTTGCTTCTCATCCAGTCTCGAAAGAACTGTGCGAATGTTCTGATCACTACC
ACGCAGTTGGTTCCAGCCCTGGCCAAGGTTCTCCTGTATGGACTAGGAGAGATATTTCCTATTGAAAACA
TCTACAGTGCTACCAAAATCGGTAAGGAGAGCTGCTTTGAGAGAATTGTTTCGAGGTTTGGGAAAAAAGT
CACATATGTAGTGATTGGAGATGGACGAGATGAAGAAATTGCAGCCAAGCAGCACAACATGCCCTTCTGG
AGGATCACAAACCACGGAGATCTGGTGTCCCTGCACCAGGCTTTAGAGCTTGACTTCCTCTGA

Translation (510 aa):
MQEPREQTLSQVNNPDASDEKPETSSLASNLSMSEEIMTCTDYIPRSSNDYTSQMYSAKPYAHILSVPVS
ETTYPGQTQYQTLQQSQPYAVYPQATQTYGLPPFASSTNASLIPTSSAIANIPAAAVASISNQDYPTYTI
LGQNQYQACYPSSSFGVTGQTNSDAETTTLAATTYQTEKPSAMVPAPATQRLPSDSSASPPLSQTTPNKD
ADDQARKNMTVKNRGKRKADASSSQDSELERVFLWDLDETIIIFHSLLTGSYAQKYGKDPTVVIGSGLTM
EEMIFEVADTHLFFNDLEECDQVHVEDVASDDNGQDLSNYSFSTDGFSGSGGSGSHGSSVGVQGGVDWMR
KLAFRYRKVREIYDKHKSNVGGLLSPQRKEALQRLRAEIEVLTDSWLGTALKSLLLIQSRKNCANVLITT
TQLVPALAKVLLYGLGEIFPIENIYSATKIGKESCFERIVSRFGKKVTYVVIGDGRDEEIAAKQHNMPFW
RITNHGDLVSLHQALELDFL


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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