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Report for CCDS18801.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18801.1 Public Mus musculus 4 E2f2 23 108 98 CCDS HistoryNCBI Gene:242705Re-query CCDS DB by CCDS ID:18801.1Re-query CCDS DB by GeneID:242705See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18801.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000061721.5 ENSMUSP00000050047.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000061721.5Link to Ensembl Protein Viewer:ENSMUSP00000050047.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000061721Re-query CCDS DB by Protein ID:ENSMUSP00000050047
Original member Current member NCBI NM_177733.7 NP_808401.1 Accepted alive Link to Nucleotide Sequence:NM_177733.7Link to Protein Sequence:NP_808401.1Re-query CCDS DB by Nucleotide ID:NM_177733Re-query CCDS DB by Protein ID:NP_808401Link to BLAST:NP_808401.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_808401.1 443 P56931 443 100% 0 0

Chromosomal Locations for CCDS 18801.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 136172781 136173038 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 136178436 136178541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 136180358 136180577 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 136181286 136181444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 136184423 136184537 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 136186799 136186991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 136192757 136193037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1332 nt):
ATGCTGCGCGCGCCGCGGACCCTGGCTCCGGCCACGGCGCAACCTACAAAGAGCTTGCCGGCGCTGAACC
CCACCGAGCTGTGGCCTTCGGGTCTGAGCAGCCCCCAGCTCTGCCCGGCCACCACCGCCACCACCTACTA
CACTTCGCTTTACACGCAGACGGTGCCTTCCTCTGTGGCGCTGGGCACCTGCCTCGACGCCACTCCCCAC
GGACCCGAGGGCCAAATTGTGCGATGTGCACCCGCAGGCCGGCTGCCGGCCAAAAGGAAGTTGGACCTGG
AGGGCATTGGGAGGCCTACGGTCCCTGAATTCCGGACCCCCAAGGGGAAGTGCATCCGCGTGGATGGTTT
GCCAAGCCCCAAAACCCCCAAGTCTCCTGGGGAGAAGACACGCTATGACACGTCGCTGGGGCTCCTGACC
AAGAAGTTCATTTACCTCCTGAGCGAGTCGGAGGATGGAGTCCTGGACCTGAACTGGGCAGCCGAGGTGC
TGGATGTGCAAAAGCGGCGCATCTATGACATCACCAACGTGCTGGAGGGTATCCAGCTCATCCGCAAGAA
GTCCAAAAACAACATCCAGTGGGTAGGCAGGGAACTATTTGAAGACCCCACCCGACCCTCCAGGCAGCAG
CAGTTGGGGCAGGAGCTGAAGGAGCTGATGAATGCCGAGCAGACCTTGGACCAGCTCATTCAGAGTTGCT
CCCTGAGCTTCAAGCACCTGACCGAAGATAATGCCAACAAGAAACTGGCCTATGTGACCTACCAGGATAT
CCGTGCCGTAGGCAACTTCAAGGAGCAGACAGTGATTGCGGTCAAGGCCCCACCACAGACAAGATTGGAA
GTGCCGGACAGGGCCGAGGAGAACCTGCAGATTTATCTAAAGAGTACCCAAGGCCCCATTGAAGTCTACC
TGTGCCCAGAGGAGGGGCAGGAGCCAGACAGTCCTGCCAAGGAGGCGCTCCCCTCCACCTCTGCCCTCAG
CCCCATTCCTGACTGCGCTCAGCCGGGCTGCAGCACTGACTCTGGGATCGCAGAGACCATAGAGCCTTCA
GTACTGATACCCCAGCCGATACCACCGCCTCCTCCACCACCACTGCCGCCAGCCCCATCCCTCGTCCCCT
TGGAAGCCACTGACAACATGCTGGAGCTGTCACACCCTCTTCTACAACAGACTGAGGACCAGTTCCTGTC
CCCAATCCTGGCGGCCAACTCCCCCCTGATCAGCTTCTCCCCGCCCTTGGACCAGGACGAATACCTGTGG
GGCATGGACGAGGGGGAAGGCATCAGTGACCTCTTCGACTCCTATGACCTTGGGGACCTGTTGATTAATT
GA

Translation (443 aa):
MLRAPRTLAPATAQPTKSLPALNPTELWPSGLSSPQLCPATTATTYYTSLYTQTVPSSVALGTCLDATPH
GPEGQIVRCAPAGRLPAKRKLDLEGIGRPTVPEFRTPKGKCIRVDGLPSPKTPKSPGEKTRYDTSLGLLT
KKFIYLLSESEDGVLDLNWAAEVLDVQKRRIYDITNVLEGIQLIRKKSKNNIQWVGRELFEDPTRPSRQQ
QLGQELKELMNAEQTLDQLIQSCSLSFKHLTEDNANKKLAYVTYQDIRAVGNFKEQTVIAVKAPPQTRLE
VPDRAEENLQIYLKSTQGPIEVYLCPEEGQEPDSPAKEALPSTSALSPIPDCAQPGCSTDSGIAETIEPS
VLIPQPIPPPPPPPLPPAPSLVPLEATDNMLELSHPLLQQTEDQFLSPILAANSPLISFSPPLDQDEYLW
GMDEGEGISDLFDSYDLGDLLIN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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