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Report for CCDS18951.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18951.1 Public Mus musculus 4 Dffa 23 108 98 CCDS HistoryNCBI Gene:13347Re-query CCDS DB by CCDS ID:18951.1Re-query CCDS DB by GeneID:13347See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18951.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030816.3 ENSMUSP00000030816.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030816.3Link to Ensembl Protein Viewer:ENSMUSP00000030816.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000030816Re-query CCDS DB by Protein ID:ENSMUSP00000030816
Original member Current member NCBI NM_001025296.2 NP_001020467.1 Accepted alive Link to Nucleotide Sequence:NM_001025296.2Link to Protein Sequence:NP_001020467.1Re-query CCDS DB by Nucleotide ID:NM_001025296Re-query CCDS DB by Protein ID:NP_001020467Link to BLAST:NP_001020467.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001020467.1 331 O54786-1 331 100% 0 0

Chromosomal Locations for CCDS 18951.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 149104251 149104386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 149106152 149106313 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 149107769 149107911 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 149117408 149117597 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 149117772 149117923 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 149119079 149119291 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (996 nt):
ATGGAGCTGTCGCGGGGAGCCAGCGCCCCAGACCCGGACGATGTCCGGCCTCTCAAACCGTGTCTGCTAC
GCCGCAACCACAGCCGCGATCAGCACGGCGTGGCAGCCTCCAGTCTCGAGGAGCTGAGGAGCAAAGCCTG
TGAACTCCTGGCCATTGATAAGTCCCTGACGCCGATCACCCTGGTCCTGGCTGAGGACGGGACCATAGTG
GATGACGATGACTACTTCCTCTGCCTTCCTTCCAATACGAAGTTTGTGGCGTTGGCCTGCAATGAGAAGT
GGATTTATAATGATTCCGATGGAGGGACGGCTTGGGTTTCCCAAGAGTCCTTTGAGGCAGATGAGCCGGA
CAGCAGGGCAGGGGTGAAGTGGAAGAATGTGGCCAGGCAGCTGAAAGAAGATCTGTCCAGCATCATCCTG
CTGTCAGAAGAGGACCTCCAAGCGCTCATCGACATCCCATGTGCAGAGCTGGCTCAGGAACTCTGCCAAA
GCTGTGCCACTGTCCAGGGGCTGCAGAGCACACTCCAGCAGGTGCTTGACCAGAGAGAGGAAGCCCGCCA
GTCCAAGCAGCTCCTGGAACTTTACCTCCAGGCCTTGGAGAAAGAGGGCAACATCTTGTCCAACCAGAAA
GAGTCCAAAGCTGCCCTCAGTGAAGAGCTGGATGCAGTTGACACAGGCGTCGGCAGAGAGATGGCTTCGG
AAGTGCTGCTCAGAAGCCAGATCCTTACCACACTGAAGGAGAAGCCTGCCCCAGAGCTGAGTTTATCTAG
TCAGGATTTGGAGTCTGTCTCCAAGGAGGATCCCAAAGCCCTGGCTGTCGCTCTGAGCTGGGACATAAGG
AAGGCAGAGACAGTCCAGCAGGCCTGCACCACGGAGCTCGCCCTGCGGCTGCAGCAAGTGCAGAGCTTGC
ATTCACTCAGGAATCTATCAGCAAGGAGGAGCCCACTGCCTGGGGAACCACAGCGACCCAAACGAGCCAA
ACGAGACTCCTCGTAG

Translation (331 aa):
MELSRGASAPDPDDVRPLKPCLLRRNHSRDQHGVAASSLEELRSKACELLAIDKSLTPITLVLAEDGTIV
DDDDYFLCLPSNTKFVALACNEKWIYNDSDGGTAWVSQESFEADEPDSRAGVKWKNVARQLKEDLSSIIL
LSEEDLQALIDIPCAELAQELCQSCATVQGLQSTLQQVLDQREEARQSKQLLELYLQALEKEGNILSNQK
ESKAALSEELDAVDTGVGREMASEVLLRSQILTTLKEKPAPELSLSSQDLESVSKEDPKALAVALSWDIR
KAETVQQACTTELALRLQQVQSLHSLRNLSARRSPLPGEPQRPKRAKRDSS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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