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Report for CCDS19009.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19009.2 Reviewed, update pending Mus musculus 4 Trp73 23 108 98 CCDS HistoryNCBI Gene:22062Re-query CCDS DB by CCDS ID:19009.2Re-query CCDS DB by GeneID:22062See the combined annotation on chromosome 4 in Sequence Viewer

Public Note for CCDS 19009.1
The coding region has been updated to extend the N-terminus to one that is more supported by available conservation data or publications. The updated start codon is conserved only in mouse and rat, so this N-terminal extension could be rodent-specific. While the updated start codon has a weak Kozak signal, an alternative downstream start codon exists that is more widely conserved and has a strong Kozak signal. It is possible that leaky scanning by ribosomes may allow this downstream start codon to be used at least some of the time. Use of the downstream start codon would result in a protein that is 7 aa shorter at the N-terminus.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 19009.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000105644.8 ENSMUSP00000101269.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000105644.8Link to Ensembl Protein Viewer:ENSMUSP00000101269.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000105644Re-query CCDS DB by Protein ID:ENSMUSP00000101269
Original member Current member NCBI NM_011642.4 NP_035772.3 Pending alive Link to Nucleotide Sequence:NM_011642.4Link to Protein Sequence:NP_035772.3Re-query CCDS DB by Nucleotide ID:NM_011642Re-query CCDS DB by Protein ID:NP_035772Link to BLAST:NP_035772.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035772.3 631 Q9JJP2-1 631 100% 0 0

Chromosomal Locations for CCDS 19009.2


Notice: Due to asynchronous updates in annotation, the current annotation is not yet consistent.


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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