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Report for CCDS19028.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19028.1 Public Mus musculus 4 Gabrd 23 108 98 CCDS HistoryNCBI Gene:14403Re-query CCDS DB by CCDS ID:19028.1Re-query CCDS DB by GeneID:14403See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19028.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030925.2 ENSMUSP00000030925.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030925.2Link to Ensembl Protein Viewer:ENSMUSP00000030925.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000030925Re-query CCDS DB by Protein ID:ENSMUSP00000030925
Original member NCBI NM_008072.2 NP_032098.2 Updated not alive Link to Nucleotide Sequence:NM_008072.2Link to Protein Sequence:NP_032098.2Re-query CCDS DB by Nucleotide ID:NM_008072Re-query CCDS DB by Protein ID:NP_032098
Current member NCBI NM_008072.3 NP_032098.2 Accepted alive Link to Nucleotide Sequence:NM_008072.3Link to Protein Sequence:NP_032098.2Re-query CCDS DB by Nucleotide ID:NM_008072Re-query CCDS DB by Protein ID:NP_032098Link to BLAST:NP_032098.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032098.2 449 P22933 449 100% 0 0

Chromosomal Locations for CCDS 19028.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 155385401 155385691 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155385935 155386146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155386403 155386558 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155387154 155387291 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155387858 155387940 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155388255 155388475 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155388566 155388633 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155388934 155389046 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155397895 155397962 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1350 nt):
ATGGACGTTCTGGGCTGGCTGCTGCTGCCGCTCCTGCTGCTCTGCACGCAGCCGCACCATGGCGCCAGGG
CAATGAATGACATTGGGGACTACGTGGGCTCCAACCTGGAAATATCCTGGCTCCCCAACCTGGATGGCTT
AATGGAGGGCTATGCCCGAAACTTCCGACCAGGCATTGGAGGTGCTCCTGTGAATGTGGCGCTTGCCCTA
GAGGTGGCCAGCATTGACCATATCTCAGAGGCAAACATGGAATACACCATGACTGTGTTCCTGCATCAGA
GCTGGCGGGACAGCAGGCTGTCCTACAACCATACCAACGAGACCTTAGGCCTGGACAGCCGCTTTGTGGA
CAAGCTATGGCTCCCTGACACCTTCATCGTGAATGCCAAATCTGCCTGGTTCCATGATGTGACTGTGGAA
AACAAGCTTATCCGCCTACAGCCTGATGGGGTGATTTTATACAGCATCCGCATCACCTCCACAGTGGCCT
GTGACATGGACCTCGCCAAGTACCCACTGGATGAGCAGGAGTGCATGCTGGACCTAGAGAGCTATGGCTA
CTCTTCTGAGGACATTGTCTATTATTGGTCAGAAAACCAGGAGCAGATCCATGGGCTGGACAGGCTGCAG
CTGGCCCAGTTCACTATCACCAGTTACCGCTTCACCACGGAGCTGATGAACTTCAAATCGGCTGGCCAGT
TCCCACGGCTCAGCTTACACTTCCAGCTTCGGAGGAACCGGGGCGTCTACATCATCCAGTCTTACATGCC
CTCTGTCCTCCTGGTTGCCATGTCCTGGGTCTCCTTCTGGATTAGCCAGGCAGCCGTGCCTGCCAGAGTA
TCTCTAGGCATCACCACTGTGCTGACAATGACCACGCTCATGGTCAGTGCCCGCTCCTCCCTGCCACGGG
CTTCAGCTATCAAAGCTCTGGATGTGTATTTTTGGATCTGCTACGTCTTTGTGTTTGCTGCCCTGGTGGA
GTATGCATTTGCCCACTTCAATGCCGACTACAGGAAGAAACGGAAAGCCAAGGTCAAGGTCACCAAGCCA
AGGGCAGAGATGGATGTGAGGAACGCCATCGTCCTTTTCTCCCTCTCAGCTGCTGGGGTCAGTCAGGAGT
TGGCTATCTCCCGTCGTCAAGGCCGGGTCCCTGGGAACCTCATGGGTTCCTATAGGTCTGTGGAAGTGGA
GGCAAAGAAGGAGGGGGGGTCCCGCCCAGGGGGCCCAGGAGGAATCCGTTCCAGACTCAAACCCATCGAT
GCAGACACCATCGACATCTATGCCCGCGCCGTCTTCCCGGCAGCTTTTGCAGCGGTCAACATCATCTACT
GGGCGGCGTACACCATGTGA

Translation (449 aa):
MDVLGWLLLPLLLLCTQPHHGARAMNDIGDYVGSNLEISWLPNLDGLMEGYARNFRPGIGGAPVNVALAL
EVASIDHISEANMEYTMTVFLHQSWRDSRLSYNHTNETLGLDSRFVDKLWLPDTFIVNAKSAWFHDVTVE
NKLIRLQPDGVILYSIRITSTVACDMDLAKYPLDEQECMLDLESYGYSSEDIVYYWSENQEQIHGLDRLQ
LAQFTITSYRFTTELMNFKSAGQFPRLSLHFQLRRNRGVYIIQSYMPSVLLVAMSWVSFWISQAAVPARV
SLGITTVLTMTTLMVSARSSLPRASAIKALDVYFWICYVFVFAALVEYAFAHFNADYRKKRKAKVKVTKP
RAEMDVRNAIVLFSLSAAGVSQELAISRRQGRVPGNLMGSYRSVEVEAKKEGGSRPGGPGGIRSRLKPID
ADTIDIYARAVFPAAFAAVNIIYWAAYTM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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