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Report for CCDS19105.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19105.1 Public Mus musculus 5 Napepld 23 108 98 CCDS HistoryNCBI Gene:242864Re-query CCDS DB by CCDS ID:19105.1Re-query CCDS DB by GeneID:242864See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19105.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000060899.8 ENSMUSP00000054458.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000060899.8Link to Ensembl Protein Viewer:ENSMUSP00000054458.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000060899Re-query CCDS DB by Protein ID:ENSMUSP00000054458
Original member Current member EBI ENSMUST00000115217.7 ENSMUSP00000110872.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000115217.7Link to Ensembl Protein Viewer:ENSMUSP00000110872.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000115217Re-query CCDS DB by Protein ID:ENSMUSP00000110872
Original member Current member NCBI NM_001359963.1 NP_001346892.1 Accepted alive Link to Nucleotide Sequence:NM_001359963.1Link to Protein Sequence:NP_001346892.1Re-query CCDS DB by Nucleotide ID:NM_001359963Re-query CCDS DB by Protein ID:NP_001346892Link to BLAST:NP_001346892.1
Original member Current member NCBI NM_001359965.1 NP_001346894.1 Accepted alive Link to Nucleotide Sequence:NM_001359965.1Link to Protein Sequence:NP_001346894.1Re-query CCDS DB by Nucleotide ID:NM_001359965Re-query CCDS DB by Protein ID:NP_001346894Link to BLAST:NP_001346894.1
Original member Current member NCBI NM_178728.6 NP_848843.1 Accepted alive Link to Nucleotide Sequence:NM_178728.6Link to Protein Sequence:NP_848843.1Re-query CCDS DB by Nucleotide ID:NM_178728Re-query CCDS DB by Protein ID:NP_848843Link to BLAST:NP_848843.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001346892.1 396 Q8BH82 396 100% 0 0
NP_001346894.1 396 Q8BH82 396 100% 0 0
NP_848843.1 396 Q8BH82 396 100% 0 0

Chromosomal Locations for CCDS 19105.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 21665228 21665362 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 21670489 21670603 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 21675455 21676101 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 21683156 21683449 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1191 nt):
ATGGATGAGTATGAGGACAGCCAGTCTCCAGCGCCAAGCTATCAGTATCCAAAAGAAACACTGAGAAAGC
GCCAGAATTCAGTGCAGAATTCAGGAGGAAGTGTGTCTTCTAGGTTCTCCAGGAAAAGCTTCAAGCTGGA
TTACAGACTAGAGGAGGACGTAACTAAATCAAAGAAAGGAAAAGACGGGAGATTTGTTAACCCATGGCCA
ACATGGAAAAACATCTCCATCCCGAATGTGCTCAGATGGCTGATAATGGAGAAGAATCACAGCGGCGTTC
CAGGTTCCAAAGAGGAACTTGACAAAGAGCTCCCGGTGCTTAAGCCATATTTTGTCAGTGACCCTGAAGA
CGCTGGAGTGAGAGAGGCTGGCTTACGAGTCACGTGGCTGGGACATGCGACGCTGATGGTGGAAATGGAC
GAGCTCATCTTCCTCACGGACCCCATGTTCAGCTCCCGTGCCTCTCCCTCGCAGTACATGGGTCCGAAGC
GGTTTCGCCGCCCGCCGTGTACAATAAGCGAACTCCCCACGATAGATGCTGTCCTCATCAGTCACAACCA
CTACGACCACCTAGACTACGGCTCGGTCCTGGCGTTGAACGAGCGGTTCGGCAGCGAGCTGCGGTGGTTT
GTGCCCTTGGGCCTTCTTGACTGGATGCAGAAATGTGGCTGCGAGAACGTGATTGAGCTGGACTGGTGGG
AGGAGAACTGCGTCCCTGGCCACGACAAGGTCACCTTCGTCTTCACGCCTTCCCAGCACTGGTGCAAAAG
GACCCTCCTGGACGACAACAAGGTTCTCTGGGGCAGCTGGTCCGTGCTAGGGCCTTGGAGTCGATTCTTC
TTTGCTGGGGATACTGGCTACTGCCCCGCTTTTGAAGAGATTGGAAAAAGGTTTGGTCCTTTTGACCTTG
CGGCCATTCCCATCGGAGCTTATGAACCAAGGTGGTTTATGAAATACCAGCATGCAGACCCAGAAGATGC
TGTAAGGATTCACATTGACCTTCAAACAAAGAGATCTGTGGCGATTCACTGGGGGACGTTTGCCTTAGCT
AATGAGCATTACCTAGAGCCGCCAGTGAAACTGAATGAAGCTCTAGAGAGATACGGACTTTCTTGTGAGG
ATTTCTTCATACTGAAGCATGGAGAGTCGAGATACTTGAATACCGATGATAGAGCTTTTGAAGAAACATG
A

Translation (396 aa):
MDEYEDSQSPAPSYQYPKETLRKRQNSVQNSGGSVSSRFSRKSFKLDYRLEEDVTKSKKGKDGRFVNPWP
TWKNISIPNVLRWLIMEKNHSGVPGSKEELDKELPVLKPYFVSDPEDAGVREAGLRVTWLGHATLMVEMD
ELIFLTDPMFSSRASPSQYMGPKRFRRPPCTISELPTIDAVLISHNHYDHLDYGSVLALNERFGSELRWF
VPLGLLDWMQKCGCENVIELDWWEENCVPGHDKVTFVFTPSQHWCKRTLLDDNKVLWGSWSVLGPWSRFF
FAGDTGYCPAFEEIGKRFGPFDLAAIPIGAYEPRWFMKYQHADPEDAVRIHIDLQTKRSVAIHWGTFALA
NEHYLEPPVKLNEALERYGLSCEDFFILKHGESRYLNTDDRAFEET


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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