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Report for CCDS19203.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19203.1 Public Mus musculus 5 Fam53a 23 108 98 CCDS HistoryNCBI Gene:74504Re-query CCDS DB by CCDS ID:19203.1Re-query CCDS DB by GeneID:74504See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19203.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000045329.9 ENSMUSP00000045539.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000045329.9Link to Ensembl Protein Viewer:ENSMUSP00000045539.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000045329Re-query CCDS DB by Protein ID:ENSMUSP00000045539
Original member Current member EBI ENSMUST00000065119.14 ENSMUSP00000070770.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000065119.14Link to Ensembl Protein Viewer:ENSMUSP00000070770.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000065119Re-query CCDS DB by Protein ID:ENSMUSP00000070770
Original member Current member NCBI NM_001359461.1 NP_001346390.1 Accepted alive Link to Nucleotide Sequence:NM_001359461.1Link to Protein Sequence:NP_001346390.1Re-query CCDS DB by Nucleotide ID:NM_001359461Re-query CCDS DB by Protein ID:NP_001346390Link to BLAST:NP_001346390.1
Original member Current member NCBI NM_001359462.1 NP_001346391.1 Accepted alive Link to Nucleotide Sequence:NM_001359462.1Link to Protein Sequence:NP_001346391.1Re-query CCDS DB by Nucleotide ID:NM_001359462Re-query CCDS DB by Protein ID:NP_001346391Link to BLAST:NP_001346391.1
Original member Current member NCBI NM_178390.3 NP_848477.2 Accepted alive Link to Nucleotide Sequence:NM_178390.3Link to Protein Sequence:NP_848477.2Re-query CCDS DB by Nucleotide ID:NM_178390Re-query CCDS DB by Protein ID:NP_848477Link to BLAST:NP_848477.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001346390.1 402 E9PV82 402 100% 0 0
NP_001346391.1 402 E9PV82 402 100% 0 0
NP_848477.2 402 E9PV82 402 100% 0 0

Chromosomal Locations for CCDS 19203.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 33600569 33600880 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 33607464 33608227 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 33610432 33610486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 33614603 33614680 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1209 nt):
ATGGTCACTCTCATCACAGAGAAGCTGCAGAACCAGAGTTTGGATGACCTCACCCGCAGGGCCTGTGAGG
CTGGCCCGTATTCTGCTGAGAAGCTGAACAAAAGTGGCCATTTGTTCCCTTTGGAGATCAGCGTGGATAA
AAGTCCCTGGAAGGCCTTACGTGGAGGATGGCCCACTGGAAGCCAGGCAGCCTCAGGCCCCTTCTCAGTG
GGCCCACATGGTGTGTCTCACACCGAAGGTCTCAAGTGGCAGCTGGAATCCCCAGGGCCCATGGATGTGG
GCCATTTCCTGGACCTCCATGATAGCACAGGGCCACCTGCAGCACCACCAACCAAGCGACACTGCCGGTC
CCTGTCAGAACCAGAGGAGCTAGCTCGATGCCGCTCCCCGTGGCGCCCTGGTAGCTCCAAGGTGTGGACT
CCCATCTCCAAGAGGAGGTGCAACAGTGGTGGGAGTGCCACACTTCAGTGCTGCAGCGGCGTGGGCAACC
CTACTCTGCAGGGCACTCTAGTCCCTGGCCTACCCAGGAGGCCTGTGTCACCCGCTGGCCCTACCTCACC
CCTGACGCCCCGGCCAGCTTCAGCCAGCAGTGGCTTTGTGGATGGCAGTGAGGGCAGTACAAGCTCAGGC
CCACCCTGGCTTTCTACAGGACCCTGCCCATTTTCTTCCAGGCGCCGACTGTCCCTCTCACAAGAGCACC
TTGTAGATACAGGTGCTTGCCTGCCTTCAGCCAGCAGCACCCCCACTTCCACACCTGAGCTAGGCCGGCA
CCATGGCCTGCTCCGGTGCCGCTCACAGCCTTGTGTATTGGATGGGAGGAGGGTCCGGCGCAAGCGAAGA
CGGGAGGAGGATGCCAGGTGGACACGCCCGTCCTTGGACTTTCTGAAAATGACACGGACTTTAAAAAACT
CCAAGAGCCTTTGCTCCCTGGACTATGAAGACGATGAGGATGACACCCAGGAGAAGACTCTTGTGTCCTC
CCCGTGTAACTCACAGGGCCTCGTGGGCATCATCACACCGAGCTCTAGCCCAAGGATTCCCAGGCCTGGC
CCTGACAGCCCCAGTATCTGGGCGTCAGGGGAGCCAGAGGCCAACCCAGGCGAGGGTGGGAGCAGTGGGG
ACCCCAGTGACTGGGACAGTGCAGGAGAGGAGGGCATCTTCCCACTGGACCACGGCGACCTGGACTTGGA
GCAGATTGAGAACAACTGA

Translation (402 aa):
MVTLITEKLQNQSLDDLTRRACEAGPYSAEKLNKSGHLFPLEISVDKSPWKALRGGWPTGSQAASGPFSV
GPHGVSHTEGLKWQLESPGPMDVGHFLDLHDSTGPPAAPPTKRHCRSLSEPEELARCRSPWRPGSSKVWT
PISKRRCNSGGSATLQCCSGVGNPTLQGTLVPGLPRRPVSPAGPTSPLTPRPASASSGFVDGSEGSTSSG
PPWLSTGPCPFSSRRRLSLSQEHLVDTGACLPSASSTPTSTPELGRHHGLLRCRSQPCVLDGRRVRRKRR
REEDARWTRPSLDFLKMTRTLKNSKSLCSLDYEDDEDDTQEKTLVSSPCNSQGLVGIITPSSSPRIPRPG
PDSPSIWASGEPEANPGEGGSSGDPSDWDSAGEEGIFPLDHGDLDLEQIENN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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