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Report for CCDS19229.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19229.1 Public Mus musculus 5 Cpz 23 108 98 CCDS HistoryNCBI Gene:242939Re-query CCDS DB by CCDS ID:19229.1Re-query CCDS DB by GeneID:242939See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19229.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000038676.6 ENSMUSP00000039804.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000038676.6Link to Ensembl Protein Viewer:ENSMUSP00000039804.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000038676Re-query CCDS DB by Protein ID:ENSMUSP00000039804
Original member Current member NCBI NM_153107.2 NP_694747.2 Accepted alive Link to Nucleotide Sequence:NM_153107.2Link to Protein Sequence:NP_694747.2Re-query CCDS DB by Nucleotide ID:NM_153107Re-query CCDS DB by Protein ID:NP_694747Link to BLAST:NP_694747.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_694747.2 654 Q8R4V4 654 100% 0 0

Chromosomal Locations for CCDS 19229.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 35502335 35502681 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 35503652 35503751 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 35506672 35506811 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 35508118 35508253 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 35511023 35511181 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 35511703 35511864 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 35512411 35512607 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 35515351 35515563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 35517393 35517767 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 35519081 35519113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 35525433 35525535 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1965 nt):
ATGCCGACAATGCCGCTGCTGCTGGCCGCGCTGGCTGCGCTGGCCGTGCTGGCCCTTGCCGCGCGCCCCA
GCCCCAGCTGCTCGCCTGGACCCGACCCCTCCGGTAAATGTCAGAGGCTGGTCTACACACACAGTGCCAC
CTGTGTGGACCTGCATCTCAGGACCTGTGCGGATGCCGCCTATAACCATACATCGTTCCCCACACCGCTG
GAGCACCGGTCGTGGGAGGCAGTGGAGTCTAGCCCTGAGTACATGCTGTTGGGTGTGATACACTTTCTCC
TGGAGGGTCAGTGCAACCCTGACCTGCGGCTGCTAGGGTGCTCTGTGTTGGCCCCCCGATGTGAGGGAGG
CCACACACAAAGGCCCTGCCGGCATGTCTGTGAGGGCCTTCGGGAGGCCTGCCAGCCGGCCTTTGACGCC
ATCGACATGGCCTGGCCCTACTTCCTTGATTGTGCCCAATACTTCGCACCAGAGGAGGAAGGCTGCTATG
ACCCTCTGGAAGAGCTCCGTGGAGAGCTGGATGTTGAGGAGGCCCTGCCCTCTGGCCTGCCACCTACCTT
CATTCGCTTCGCCCACCACTCCTATGCTCAGATGGTCCGAGTGCTGAAGAGGACAGCGGCCCGCTGTTCC
CAGGTGGCCAAGACCTACAGCATTGGGCGCAGCTTTGAAGGCAAGGACCTGGTGGTCATCGAGTTCTCGA
GCCGCCCAGGCCAGCATGAACTGATGGAGCCTGAGGTGAAGCTCATTGGAAACATTCATGGCAATGAGGT
GGCCGGACGGGAAGTGCTCATCTACCTGGCCCAGTACCTGTGCTCGGAGTACCTGCTGGGCAACCCTCGC
ATCCAGCGCCTGCTGAACACCACCCGCATCCACCTGCTGCCATCCATGAACCCTGATGGCTACGAAGTGG
CAGCTGCAGAGGGTGCTGGATACAATGGCTGGACCAGTGGAAGGCAGAATGCACAGAACCTGGATCTGAA
CCGCAACTTCCCTGACCTCACGTCAGAGTACTACCGGCTGGCCTCGACTCGTGGTGTGCGCACAGACCAT
ATCCCCATCTCACAGTACTACTGGTGGGGTAAGGTGGCCCCCGAGACCAAAGCCATCATGAAGTGGATAC
AGACCATTCCCTTCGTCCTCTCAGCCAGCCTGCATGGCGGCGACCTGGTGGTATCCTACCCCTTCGACTT
CTCCAAGAACCCCCATGAGAAAAAGATGTTTTCTCCCACACCAGATGAGAAGATGTTCAAGCTTCTGGCC
AGAGCCTATGCTGATGTCCACCCCATGATGATGGACAGGTCGGAGAACAGGTGTGGGGGCAACTTCCTGA
AGCGGGGGAGCATCATCAACGGGGCGGACTGGTACAGCTTCACTGGAGGTATGTCTGACTTCAACTACTT
ACATACCAACTGCTTTGAGATCACTGTGGAACTGGGCTGTGTGAAGTTCCCCCCAGAGGAGGCGCTGTAT
GGCCTGTGGCAACAGAACAAGGAGCCCCTACTCAACTTCCTGGAGATGGTACACCGAGGCATCAAGGGTA
TGGTGACAGATAAATACGGAAAGCCAGTCAAGAACGCACGGATTCTGGTGAAAGGCATCCGCCACGATGT
CACCACAGCCCCTGATGGTGACTACTGGAGACTTCTTCCCCCGGGTTCCCATATCGTCATTGCTCAGGCC
CCTGGCTATTCCAAGGTCATGAAGAGAGTCACCATTCCCTTGCGCATGAAGAAGGCCGGCCGTGTGGACT
TCATCCTCCATCCTCTGGCGACAGGACCCAAGAACTTCCTTCCTGGACCTTCGAGAGCTTTACCTCGGTT
CCAGGATCCTCAGAGAGAGCCCACACAGATGGATTTTGAGCCCCCCAGGGCTCGTAGGCAGCCAGCTAGT
GGGAGCAAGCCATGGTGGTGGGCTTACTTCACATCACTGAGCCCGTACAAGCCACGCTGGCTGCTCAAGT
ACTAG

Translation (654 aa):
MPTMPLLLAALAALAVLALAARPSPSCSPGPDPSGKCQRLVYTHSATCVDLHLRTCADAAYNHTSFPTPL
EHRSWEAVESSPEYMLLGVIHFLLEGQCNPDLRLLGCSVLAPRCEGGHTQRPCRHVCEGLREACQPAFDA
IDMAWPYFLDCAQYFAPEEEGCYDPLEELRGELDVEEALPSGLPPTFIRFAHHSYAQMVRVLKRTAARCS
QVAKTYSIGRSFEGKDLVVIEFSSRPGQHELMEPEVKLIGNIHGNEVAGREVLIYLAQYLCSEYLLGNPR
IQRLLNTTRIHLLPSMNPDGYEVAAAEGAGYNGWTSGRQNAQNLDLNRNFPDLTSEYYRLASTRGVRTDH
IPISQYYWWGKVAPETKAIMKWIQTIPFVLSASLHGGDLVVSYPFDFSKNPHEKKMFSPTPDEKMFKLLA
RAYADVHPMMMDRSENRCGGNFLKRGSIINGADWYSFTGGMSDFNYLHTNCFEITVELGCVKFPPEEALY
GLWQQNKEPLLNFLEMVHRGIKGMVTDKYGKPVKNARILVKGIRHDVTTAPDGDYWRLLPPGSHIVIAQA
PGYSKVMKRVTIPLRMKKAGRVDFILHPLATGPKNFLPGPSRALPRFQDPQREPTQMDFEPPRARRQPAS
GSKPWWWAYFTSLSPYKPRWLLKY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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