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Report for CCDS19235.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19235.1 Public Mus musculus 5 Ablim2 23 108 98 CCDS HistoryNCBI Gene:231148Re-query CCDS DB by CCDS ID:19235.1Re-query CCDS DB by GeneID:231148See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19235.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000054598.11 ENSMUSP00000050571.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000054598.11Link to Ensembl Protein Viewer:ENSMUSP00000050571.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000054598Re-query CCDS DB by Protein ID:ENSMUSP00000050571
Original member Current member NCBI NM_177678.7 NP_808346.3 Accepted alive Link to Nucleotide Sequence:NM_177678.7Link to Protein Sequence:NP_808346.3Re-query CCDS DB by Nucleotide ID:NM_177678Re-query CCDS DB by Protein ID:NP_808346Link to BLAST:NP_808346.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_808346.3 612 Q8BL65-1 612 100% 0 0

Chromosomal Locations for CCDS 19235.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 35758051 35758060 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 35798453 35798596 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 35802360 35802543 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 35807039 35807154 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 35809183 35809309 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 35812126 35812219 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 35824025 35824112 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 35828124 35828182 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 35833053 35833130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 35836948 35837097 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 35841281 35841401 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 35848804 35848905 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 35849516 35849569 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 35857128 35857180 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 35857826 35857964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 35866705 35866766 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 35873170 35873224 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 35874633 35874640 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 35874833 35874913 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 35883306 35883419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1839 nt):
ATGAGCGCAGTGTCGCAGCCCCAGGCTGCTCATGCCCCACTGGAGAAGCCGGCCAGCACTGCGATCCTGT
GTAATACCTGTGGGAATGTGTGCAAGGGAGAGGTGCTGCGTGTGCAGAACAAGTACTTCCACATCAGGTG
CTTTGTGTGCAAAGCGTGTGGCTGTGACCTGGCTGAGGGTGGCTTCTTCGTGAGGCAGGGTGAGCACATT
TGCACACGTGACTACCAGCGGCTCTATGGCACTCGCTGCTTCAGCTGTGACCGCTTCATTGAAGGCGAAG
TGGTGTCGGCGCTTGGGAAGACCTACCACCCTGACTGCTTCGTGTGTGCTGTCTGCAGGCTGCCCTTTCC
TCCTGGGGACCGTGTGACCTTCAACGGGAAGGAGTGTATGTGCCAGAAGTGTTCCCCACCCACATTGCTG
GGCAACAGTGCTCACGTGGCCCAGGGCCTCCGGAGTTGTGGGGGCTGTGGCTTAGAAATCAAGAATGGCC
AGGCCCTGGTGGCTTTGGACAAGCACTGGCACCTGGGATGCTTCAAGTGCAAGACTTGTGGGAAACTCCT
CAATGCAGAGTACATCAGCAAGGACGGGCTGCCCTACTGCGAGGCTGATTATCACAGCAAGTTTGGCATC
CGCTGCGACGGCTGTGAGAAGTACATCACGGGCCGGGTGCTAGAGGCCGGAGAGAAGCACTACCACCCTT
CATGTGCGCTATGCGTCAGGTGCGGCCAGATGTTCTCAGAGGGCGAGGAGATGTACCTGCAAGGCTCCTC
CATCTGGCATCCGGCATGTCGACAGGCAGCCAGGACTGAAGACAAGAGCAAGGAAACCAGGACTTCTTCG
GAGAGCATTGTCTCCGTGCCTGCCTCCAGCACGTCAGGGTCCCCGAGCCGTGTGATCTACGCAAAGCTTG
GCGATGAGATCCTGGACTACAGGGACTTGGCTGCTCTTCCCAAAAACAAAGCGATCTACAACATCGACCG
CCCCGACATGATCTCCTATTCGCCCTACATTAGCCACTCGGCCGTGGGGGACAGGCAGAGCTATGGCGAG
GGGGATCAGGATGATCGGTCCTACAAGCAGTGCAGGACCTCCAGCCCCAGCTCTGCCGGCTCAGTCAGCC
TCGGACACTACACCCCAACCTCACGGTCACCCCAGCACTACAGTCGTCCAGGCAGCGAAAGTGGCCGTAG
CACCCCGAGTCTCTCAGTGCACTCCGACAGCAGACCTCCTTCCTCTACCTACCAGCAGGCTCCGAGACAC
TTCCACGTCCCAGACACTGGCGTAAAAGATAACATCTATAGGAAACCCCCTATCTACAAACAGCACGCTG
CCAGGCGATTGGACGTGGAGGACAGCAGCTTTGACCAGGACAGCAGGAAGAAGACAACCTGGCTGCTTCT
CAAGGGGGATGCAGACACCAGAACTAACTCTCCAGACCTGGACAGTCAGTCGCTGTCCCTCAGCAGCGGG
ACTGACCAGGAACCTCTCCAAAGAATGGCAGGGGACAGCCTCTACTCACGCTTTCCTTATTCCAAACCTG
ACACTCTTCCAGGACCCAGGAAGGATGGCCTGGACCTCCGGAATGCCAACCTGGCCCCTTGTGGAGCAGA
CCCGGATGCCAGCTGGGGCACGCGAGAGTATAAGATATATCCCTATGATTCCCTCATCGTAACAAACCGA
ATTCGTGTGAAACTGCCCAAAGACGTGGACCGGACACGGCTGGAGAGACACCTATCACCTGAGGAGTTCC
AAGAAGTGTTTGGGATGAGCATCGAGGAGTTTGACCGCCTGGCCCTGTGGAAGAGGAATGACCTCAAGAA
GAAAGCCTTGCTGTTCTGA

Translation (612 aa):
MSAVSQPQAAHAPLEKPASTAILCNTCGNVCKGEVLRVQNKYFHIRCFVCKACGCDLAEGGFFVRQGEHI
CTRDYQRLYGTRCFSCDRFIEGEVVSALGKTYHPDCFVCAVCRLPFPPGDRVTFNGKECMCQKCSPPTLL
GNSAHVAQGLRSCGGCGLEIKNGQALVALDKHWHLGCFKCKTCGKLLNAEYISKDGLPYCEADYHSKFGI
RCDGCEKYITGRVLEAGEKHYHPSCALCVRCGQMFSEGEEMYLQGSSIWHPACRQAARTEDKSKETRTSS
ESIVSVPASSTSGSPSRVIYAKLGDEILDYRDLAALPKNKAIYNIDRPDMISYSPYISHSAVGDRQSYGE
GDQDDRSYKQCRTSSPSSAGSVSLGHYTPTSRSPQHYSRPGSESGRSTPSLSVHSDSRPPSSTYQQAPRH
FHVPDTGVKDNIYRKPPIYKQHAARRLDVEDSSFDQDSRKKTTWLLLKGDADTRTNSPDLDSQSLSLSSG
TDQEPLQRMAGDSLYSRFPYSKPDTLPGPRKDGLDLRNANLAPCGADPDASWGTREYKIYPYDSLIVTNR
IRVKLPKDVDRTRLERHLSPEEFQEVFGMSIEEFDRLALWKRNDLKKKALLF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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