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Report for CCDS19401.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19401.1 Public Mus musculus 5 Jchain 23 108 98 CCDS HistoryNCBI Gene:16069Re-query CCDS DB by CCDS ID:19401.1Re-query CCDS DB by GeneID:16069See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19401.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000087033.5 ENSMUSP00000084259.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000087033.5Link to Ensembl Protein Viewer:ENSMUSP00000084259.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000087033Re-query CCDS DB by Protein ID:ENSMUSP00000084259
Original member NCBI NM_152839.3 NP_690052.2 Updated not alive Link to Nucleotide Sequence:NM_152839.3Link to Protein Sequence:NP_690052.2Re-query CCDS DB by Nucleotide ID:NM_152839Re-query CCDS DB by Protein ID:NP_690052
Current member NCBI NM_152839.4 NP_690052.2 Accepted alive Link to Nucleotide Sequence:NM_152839.4Link to Protein Sequence:NP_690052.2Re-query CCDS DB by Nucleotide ID:NM_152839Re-query CCDS DB by Protein ID:NP_690052Link to BLAST:NP_690052.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_690052.2 159 P01592 159 100% 0 0

Chromosomal Locations for CCDS 19401.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 88521313 88521526 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 88522493 88522573 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 88526099 88526219 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 88527716 88527779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (480 nt):
ATGAAGACCCACCTGCTTCTCTGGGGAGTCCTGGCCATTTTTGTTAAGGCTGTCCTTGTAACAGGTGACG
ACGAAGCGACCATTCTTGCTGACAACAAATGCATGTGTACCCGAGTTACCTCTAGGATCATCCCTTCCAC
CGAGGATCCTAATGAGGACATTGTGGAGAGAAATATCCGAATTGTTGTCCCTTTGAACAACAGGGAGAAT
ATCTCTGATCCCACCTCCCCACTGAGAAGGAACTTTGTATACCATTTGTCAGACGTCTGTAAGAAATGCG
ATCCTGTGGAAGTGGAGCTGGAAGATCAGGTTGTTACTGCCACCCAGAGCAACATCTGCAATGAAGACGA
TGGTGTTCCTGAGACCTGCTACATGTATGACAGAAACAAGTGCTATACCACTATGGTCCCACTTAGGTAT
CATGGTGAGACCAAAATGGTGCAAGCAGCCTTGACCCCCGATTCTTGCTACCCTGACTAG

Translation (159 aa):
MKTHLLLWGVLAIFVKAVLVTGDDEATILADNKCMCTRVTSRIIPSTEDPNEDIVERNIRIVVPLNNREN
ISDPTSPLRRNFVYHLSDVCKKCDPVEVELEDQVVTATQSNICNEDDGVPETCYMYDRNKCYTTMVPLRY
HGETKMVQAALTPDSCYPD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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