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Report for CCDS19435.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19435.1 Public Mus musculus 5 Sowahb 23 108 98 CCDS HistoryNCBI Gene:78088Re-query CCDS DB by CCDS ID:19435.1Re-query CCDS DB by GeneID:78088See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19435.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000061328.5 ENSMUSP00000055267.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000061328.5Link to Ensembl Protein Viewer:ENSMUSP00000055267.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000061328Re-query CCDS DB by Protein ID:ENSMUSP00000055267
Original member NCBI NM_175270.4 NP_780479.1 Updated not alive Link to Nucleotide Sequence:NM_175270.4Link to Protein Sequence:NP_780479.1Re-query CCDS DB by Nucleotide ID:NM_175270Re-query CCDS DB by Protein ID:NP_780479
Current member NCBI NM_175270.5 NP_780479.1 Accepted alive Link to Nucleotide Sequence:NM_175270.5Link to Protein Sequence:NP_780479.1Re-query CCDS DB by Nucleotide ID:NM_175270Re-query CCDS DB by Protein ID:NP_780479Link to BLAST:NP_780479.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_780479.1 760 Q8BZW2 760 100% 0 0

Chromosomal Locations for CCDS 19435.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 93042576 93044858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2283 nt):
ATGGCCGGAGAGCTGAGCCAGGAGGCACTGCTGGACTTTCTGTGCCAGGCCGGGGGCCGAGTGCGTAACG
CAGAGCTGCTGAGCCACTTCAAGAGCTTCCTGCGCGACCCTCACGTGTCTCCAGGCCAGCTGCAGGAGCG
TCGCGAGCGCTTCAAGGGCTTCGTGAACTCGGTGGCCGCAGTGCGCCAGGACCCCGACGGCACCAAGTAC
GTGGTGCTCAAGAGGAGGTACAGGGACCTACTGGGGGAGGAGGGCCTGCAGCGACCGGGCCCTGTAGATG
GAAAGCCGCGGGGCCACCGCCGCCGTGACCCGGAGCCGCAGAAGCCGCCGGCAGGTGCGGGGACCCAGGT
GGACGTAGGTGGCAGCGCGCAGAAGGTGGCCGGGCCAGACCCCAGCCCGGAGGACAGCCCGAACCAGAGG
ACACCGGAGCCAGAGGCTGCTCAAGCCAGAGGCAGGTGTGCGGCTGTGGGGACGCGAGGACGCTGCTGCT
GGGAGTGCCAGCAGAACGGCTGGGGACAGTCCACCGGACAGCCGCTGCCAGAAGATCTCGGAGACCCTGC
AGTCGCCTGCGAGAAGCCGGAGCGCGCTGCACCTGCCCGGGATGACCTCGGAGCTCCGGGGTGGCTGAGG
GAAGGAGAGGCCGCCGAGCACGCGCCTGGATCTGTACCGCCTGTCTGGCCTCCGACCGCCGTCGAGGCTG
CTGGCAGCCCGACGTCCCCGCCTGCTCTCCCGCCCCACCCGGCGCCCTCCAGAGAGCCACTGGAGCTGTT
TACCGCCGGCTCCCCGAACCATTCAACCCAGCAGCTGCAGCAACAGCACCAGCGCACTCAAGAGTGGGTA
GCCAGATACCTGCAGGTGCCTGAGCCCGAGATCCAGGCGCCCACTCGCGCCTGGTCGGTGTTGCCAGACA
ACTTCCTCCAGCTACCTTCAGAAACCGCCTTTGGGGTCTCGGAGACCAGCTCGGCGCTGCCAGAGCCCGC
TCTGTCTTTTCATTCTCTCCTTCCCGTGGTTCTCGATGAGTCCTCAGAATCCTGGCCAGGGAACGCTCCA
TCTACCGTCTTTCGAAGCATTCGTTGTCAGCTGTCCCTCCAGGATCTGAATGACTTTGTGGAGCAAGAGA
GCCATGGAAGTGAGGAGAGCAGCAGTGGACCCAAAGAATCTCCCGGAACCCCCGAAGAGGGGCTGCAACC
TGTCTTGAGAACTTCCTCCTGGGGGGAGCTCAGGGATCCAGTTGAGGATCTGTTTTTGCCACCAAACGAC
AGCCCTTGCCTGATCCGGCGGGACCTCGGATATAGAGGGAATGCGCCCAGTTTTCGGAAGGTCCCAACAG
TGGCTAAAAGCCTTGGAGACCACCCCCAAGAGCCCTTCCCTGCCCTCAAGTTCCGAAGGTCTGTCAGGAG
GAGCTCTCGAACAGGAAGAACCAAATCTCCTTCTTCCTCAGACGAGGAGCATCCTGATGAGGACTTGTGG
AAAAGGAGTCGGCGCCCACCTCGGTCCAGGAAACCTTCCAAGGCAGGAGCCCTGCCCAGCCCAAGGGTGG
ATGCTGTTTTGGTACAGAAATTGGCAGATGCTAATGCTGTGGCCAGTCAGCCACACTCTTCATGGATCCC
AAGCAGGGATGGATCTGCAGCCTTGATACCCCACAGACCTTCTGAGCACAGGTCCCCCCTTGTCCCTCTA
GACACCAGGGAGCATGAGTGGATTGTGAGGCTTGCCAGTGGTTCCTGGCTTCACGTGCTGACTTTGTTCT
GGGAGGACCCCCAGCTGGCTTTGCACAGAGACTTCCTGACTGGGTACACAGCCTTGCACTGGATAGCAAA
GCATGGTGACCTGTGTGCCCTTCAGGATTTGGTCTCTGGAGCCCAGAAGGCGGGCATTGCACTAGATGTA
AATGTGAGGTCCAGTTGTGGCTATACCCCACTGCACCTTGCAGCTATTCACGGGCACCAGGGAGTCATCA
AATTGCTAGTGCAAAGACTGGCTTCTCGGGTGAACATTCGGGACTGCAGTGGCAAGAAGCCATGGCAGTA
TCTGAACAGTAACGTCTCTGGGGAAACGTGGCAGCTCCTGGGTGCACCCCGGGGCAAACCTATCTTCCCT
GTCTATTCCTTAGTCCAAAGCTCTTCCCCAGCCAGGAAGGTCAAGAGCCGGGAAGTGTCTAGAAATGTCA
CCCGGAAGACTTCCTTGGCTGCTTTGCTCAAAACTCAGCACAACAAATGGAAATTGGCCAGCCAATATGA
GAAAATCCACACCTCAAAGGAGAGAGAAGAGTATAGTGACTGA

Translation (760 aa):
MAGELSQEALLDFLCQAGGRVRNAELLSHFKSFLRDPHVSPGQLQERRERFKGFVNSVAAVRQDPDGTKY
VVLKRRYRDLLGEEGLQRPGPVDGKPRGHRRRDPEPQKPPAGAGTQVDVGGSAQKVAGPDPSPEDSPNQR
TPEPEAAQARGRCAAVGTRGRCCWECQQNGWGQSTGQPLPEDLGDPAVACEKPERAAPARDDLGAPGWLR
EGEAAEHAPGSVPPVWPPTAVEAAGSPTSPPALPPHPAPSREPLELFTAGSPNHSTQQLQQQHQRTQEWV
ARYLQVPEPEIQAPTRAWSVLPDNFLQLPSETAFGVSETSSALPEPALSFHSLLPVVLDESSESWPGNAP
STVFRSIRCQLSLQDLNDFVEQESHGSEESSSGPKESPGTPEEGLQPVLRTSSWGELRDPVEDLFLPPND
SPCLIRRDLGYRGNAPSFRKVPTVAKSLGDHPQEPFPALKFRRSVRRSSRTGRTKSPSSSDEEHPDEDLW
KRSRRPPRSRKPSKAGALPSPRVDAVLVQKLADANAVASQPHSSWIPSRDGSAALIPHRPSEHRSPLVPL
DTREHEWIVRLASGSWLHVLTLFWEDPQLALHRDFLTGYTALHWIAKHGDLCALQDLVSGAQKAGIALDV
NVRSSCGYTPLHLAAIHGHQGVIKLLVQRLASRVNIRDCSGKKPWQYLNSNVSGETWQLLGAPRGKPIFP
VYSLVQSSSPARKVKSREVSRNVTRKTSLAALLKTQHNKWKLASQYEKIHTSKEREEYSD


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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