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Report for CCDS19436.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19436.1 Public Mus musculus 5 Ccni 23 108 98 CCDS HistoryNCBI Gene:12453Re-query CCDS DB by CCDS ID:19436.1Re-query CCDS DB by GeneID:12453See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19436.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000058550.14 ENSMUSP00000050189.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000058550.14Link to Ensembl Protein Viewer:ENSMUSP00000050189.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000058550Re-query CCDS DB by Protein ID:ENSMUSP00000050189
Original member NCBI NM_017367.3 NP_059063.2 Updated not alive Link to Nucleotide Sequence:NM_017367.3Link to Protein Sequence:NP_059063.2Re-query CCDS DB by Nucleotide ID:NM_017367Re-query CCDS DB by Protein ID:NP_059063
Current member NCBI NM_017367.4 NP_059063.2 Accepted alive Link to Nucleotide Sequence:NM_017367.4Link to Protein Sequence:NP_059063.2Re-query CCDS DB by Nucleotide ID:NM_017367Re-query CCDS DB by Protein ID:NP_059063Link to BLAST:NP_059063.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_059063.2 377 Q9Z2V9 377 100% 0 0

Chromosomal Locations for CCDS 19436.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 93182977 93183420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 93187588 93187818 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 93188080 93188220 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 93189147 93189221 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 93189564 93189692 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 93202305 93202418 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1134 nt):
ATGAAGTTTCCAGGACCTTTGGAAAACCAGAGATTGTCTTCTCTGTTGGAAAGGGCAATCTCCAGGGAAG
CCCAGATGTGGAAGGTGAATGTGCCGAAAATACCTACAAATCAGAATGTTTCTCCATCCCAGAGAGATGA
AGTAATTCAATGGTTGGCCAAACTCAAATACCAGTTCAACCTCTATCCAGAAACATTTGCTCTGGCAAGC
AGTCTTTTGGATAGGTTTTTAGCTACAGTAAAAGCCCATCCAAAATATTTGAATTGTATTGCAATCAGCT
GTTTTTTTCTGGCTGCTAAGACTGTTGAGGAAGATGAGAAAATTCCAGTGCTAAAGGTATTGGCAAGAGA
CAGTTTCTGTGGATGTTCCTCATCTGAGATTTTGAGAATGGAGAGAATTATTCTGGATAAATTGAATTGG
GATCTTCACACGGCTACACCATTGGATTTTCTTCACATTTTCCATGCCATTGCGGTGTCAGCTAGGCCTC
AGTTACTTTTCAGTTTGCCCAAATTGAGCCCATCTCAACATTTGGCAGTCCTGACCAAGCAGCTGCTTCA
CTGTATGGCCTGCAACCAACTTCTGCAGTTCAAAGGGTCCATGCTTGCTCTGGCCATGGTTAGTCTGGAA
ATGGAGAAACTCATTCCTGATTGGCTTCCTCTTACGATTGAACTGCTTCAGAAAGCACAGATGGACAGCT
CCCAGTTGATCCACTGTCGGGAGCTGGTGGCATATCACCTTTCTGCTCTGCAGTCTGCCCTGCCTCTAAA
TTCCGTTTATGTCTACCGTCCCCTCAAGCACACCCTGGTAACCTGTGACAAAGGAGCATTCAAATTACAT
CCCTCCTCTGTCTCAGGCCCAGATTTCTCCAAGGACAACAGCAAGCCAGAAGTGCCAGTCCGAGGTCCAG
CAGCCTTCCACCTGCATCTCCCCGCTGCCAGTGGGTGCAAGCAAACCTCTGCTAAACGGAAAGTGGAGGA
GATGGAGGTGGATGACTTCTACGATGGGATCAAGCGGCTCTATAATGAGGACAATGGTCCTGAGAATGTG
GGTTCTGTATGTGGCACTGATTTATCAAGGCAAGAGGGCCATGCTTCCCCCTGTCCACCTTTGCAGCCTG
TTTCTGTCATGTAG

Translation (377 aa):
MKFPGPLENQRLSSLLERAISREAQMWKVNVPKIPTNQNVSPSQRDEVIQWLAKLKYQFNLYPETFALAS
SLLDRFLATVKAHPKYLNCIAISCFFLAAKTVEEDEKIPVLKVLARDSFCGCSSSEILRMERIILDKLNW
DLHTATPLDFLHIFHAIAVSARPQLLFSLPKLSPSQHLAVLTKQLLHCMACNQLLQFKGSMLALAMVSLE
MEKLIPDWLPLTIELLQKAQMDSSQLIHCRELVAYHLSALQSALPLNSVYVYRPLKHTLVTCDKGAFKLH
PSSVSGPDFSKDNSKPEVPVRGPAAFHLHLPAASGCKQTSAKRKVEEMEVDDFYDGIKRLYNEDNGPENV
GSVCGTDLSRQEGHASPCPPLQPVSVM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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