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Report for CCDS19584.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19584.1 Public Mus musculus 5 Rnf10 23 108 98 CCDS HistoryNCBI Gene:50849Re-query CCDS DB by CCDS ID:19584.1Re-query CCDS DB by GeneID:50849See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19584.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000112096.8 ENSMUSP00000107725.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112096.8Link to Ensembl Protein Viewer:ENSMUSP00000107725.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000112096Re-query CCDS DB by Protein ID:ENSMUSP00000107725
Original member NCBI NM_016698.2 NP_057907.2 Updated not alive Link to Nucleotide Sequence:NM_016698.2Link to Protein Sequence:NP_057907.2Re-query CCDS DB by Nucleotide ID:NM_016698Re-query CCDS DB by Protein ID:NP_057907
Current member NCBI NM_016698.3 NP_057907.2 Accepted alive Link to Nucleotide Sequence:NM_016698.3Link to Protein Sequence:NP_057907.2Re-query CCDS DB by Nucleotide ID:NM_016698Re-query CCDS DB by Protein ID:NP_057907Link to BLAST:NP_057907.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_057907.2 804 Q3UIW5-1 804 100% 0 0

Chromosomal Locations for CCDS 19584.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 115241985 115242061 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 115242393 115242551 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 115242634 115242691 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 115244021 115244121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 115245849 115246004 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 115246880 115246981 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 115247169 115247286 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 115248582 115248715 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 115248915 115249170 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 115249397 115249522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 115249970 115250130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 115251066 115251202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 115251277 115251461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 115255350 115255440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 115256974 115257173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 115260119 115260315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 115272257 115272413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2415 nt):
ATGCCGCAGAGCTCCCCCAGCGCCGCCGCCACCGCCTCCGACATGGACAAGAACAGCGGCTCCAACAGCT
CCTCCGCCTCCTCGGGCAGCAGCAAAGGGCAACAGCCGCCCCGCTCCGCCTCGGCGGGGCCGGCCGGCGA
GTCTAAACCCAAGAGTGATGGAAAGAACTCAAATGGATCCAAGCGTTACAATCGCAAGCGTGAACCCTCC
TACCCCAAAAATGAAAATTTTAGCAACCAGTCCCGTCGCTCCAATTCACAGAAAAGCAAAACTTTTAACA
AGATGCCTCCTCAAAGGGGCGGTGGCAGCAGCAAACCCTTTAGCTCTTCTTCTAATGGTGGAAGACGAGA
TGAGGTAGCAGAGGCTCAGCGGGCAGAGTTTAGCCCTGCCCAGTTCTCTGGCCCTAAGAAGATCAACCTG
AACCACTTGTTAAATTTCACCTTTGAACCACGTGGCCAGGCAGGTCACTTTGAAGGCAGTGGGCATGGCG
GCTGGGGGAAGAGAAACAAGTGGGGACACAAGCCTTTCAACAAGGAGCTCTTTCTACAGGCCAACTGCCA
ATTTGTGGTGTCTGAAGACCAAGACTACGCAGCTCACTTTGCTGACCCTGACACCTTAGTCAACTGGGAC
TTTGTGGAACAAGTGCGCATCTGTAGCCATGAAGTGCCATCTTGCCCAATATGCCTCTATCCACCTACTG
CGGCCAAGATAACGCGCTGTGGACACATTTTCTGCTGGGCATGCATCCTGCACTATCTTTCACTCAGTGA
GAAAACCTGGAGCAAATGTCCCATCTGCTACAGCTCTGTGCATAAGAAGGATCTCAAGAGTGTTGTTGCC
ACAGAGTCTCGACAGTATGCTGTGGGGGACACCATTACCATGCAGCTGATGAAGAGAGAGAAGGGAGTGT
TGGTGGCCCTGCCCAAATCCAAGTGGGTGAATGTAGACCATCCTATTAACCTAGGAGATGAGCAGCTCAG
CCAGTATTCCAAGCTGCTGCTGGCCTCGAAGGAGCAGGTGCTGCACCGGGTAGTTCTGGAGGAGAAAGGA
GCGCTGGAGCAGCAGCTGGCAGAGGAGAAGCACACTCCTGAGTCCTGTTTCATTGAGGCTGCTATCCAGG
AGGTCAAGATTCGGGAAGAAGCTCTGTCAGGAGTGGCTGGAGGCGGAGGGGAGGTCACTGGTGTTGTGGC
TGCTCTGGAACACCTGGTGCTGATGGCTCCCCTGGCCACGGAGTCTGCTTTCCAACCCAGGAAGGGTGTG
CTGGAGTATCTGTCTGCTTTTGATGATGAAGCTGCACAAGTTTGTTCTCTGGACCCCCCTGGTCCTCTTG
CCCTCCCTTTGGTAGAAGAGGAGGAAGCAGTGTCTGAGCCAGAAGCCTGTGAGGACGCAGAGGTAGCCGA
TGACAGTCTGGGAGAGGGGACTGTTGGTCCTGAGATGAGCCAGGAGGAGCCCATCACTAAGCCAGGCTTC
ACCCAGCTCAGCAGCTCTCCGTGTTACTACTTCTACCAGGCGGAAGATGGACAGCACATGTTCCTGCACC
CTGTCAACGTGCGCTGCCTTGTGCGGGAGTACGGCAGCCTGGAGCAGAGCCCAGAGAAGATCTCAGCAAC
CGTGGTAGAGATTGCTGGGTATTCCATGTCTGAGGATGTTCGGCAGCGTCATAGGTATCTCTCTCACTTG
CCACTCACCTGTGAGTTCAGCATCTGTGAACTGGCTCTGCAGCCTCCTGTGGTCTCTAAGGAAACCCTAG
AGATGTTCTCAGATGACATTGAGAAAAGGAAGCGTCAGCGCCAAAAGAAGGCTCGCGAGGAGCGTCGCCG
AGAGCGCAGAATTGAGATGGAGGAGAACAAGAGACAGGGCAGGTATCCCGAGGTCCACATTCCCCTCGAG
AACCTACAGCAGTTTCCGGCCTTCAATTCCTATACCTGTCCCTCTGATTCTGCTTTGGGTCCCACCAGCA
CTGAGGGCCATGGGGCCCTATCCCTGTCTCCTCTGAGCAGAAGTCCAGGCTCCCATGCAGACTTTCTGCT
GACCCCTCTGTCACCCACTGCCAGTCAGGGCAGTCCTTCCTTCTGCGTTGGGAGTCTGGAAGACGACTCT
CCCTTCCTTTCCTTTGCCCAGATGCTGAGGGTTGGCAAAGCAAAAGCAGACGGGTGGCCCAAAACTGCTC
CAAAGAAAGATGACAATAGCTTGGTTCCTCCCGCCCCTGTGGACAGTGATGGGGAGAGTGACAATTCTGA
CCGTGTTCCTGTGCCCAGTTTCCAAAATTCCTTCAGCCAAGCTATCGAAGCAGCCTTCATGAAATTGGAC
ACACCAGCTACTTCAGACCCCCTCTCTGAAGACAGAGGAGGGAAGAAAAGGAAGAGACAGAAGCAGAAGC
TGCTGTTCAGCACCTCGGTCGTCCACACCAAGTGA

Translation (804 aa):
MPQSSPSAAATASDMDKNSGSNSSSASSGSSKGQQPPRSASAGPAGESKPKSDGKNSNGSKRYNRKREPS
YPKNENFSNQSRRSNSQKSKTFNKMPPQRGGGSSKPFSSSSNGGRRDEVAEAQRAEFSPAQFSGPKKINL
NHLLNFTFEPRGQAGHFEGSGHGGWGKRNKWGHKPFNKELFLQANCQFVVSEDQDYAAHFADPDTLVNWD
FVEQVRICSHEVPSCPICLYPPTAAKITRCGHIFCWACILHYLSLSEKTWSKCPICYSSVHKKDLKSVVA
TESRQYAVGDTITMQLMKREKGVLVALPKSKWVNVDHPINLGDEQLSQYSKLLLASKEQVLHRVVLEEKG
ALEQQLAEEKHTPESCFIEAAIQEVKIREEALSGVAGGGGEVTGVVAALEHLVLMAPLATESAFQPRKGV
LEYLSAFDDEAAQVCSLDPPGPLALPLVEEEEAVSEPEACEDAEVADDSLGEGTVGPEMSQEEPITKPGF
TQLSSSPCYYFYQAEDGQHMFLHPVNVRCLVREYGSLEQSPEKISATVVEIAGYSMSEDVRQRHRYLSHL
PLTCEFSICELALQPPVVSKETLEMFSDDIEKRKRQRQKKAREERRRERRIEMEENKRQGRYPEVHIPLE
NLQQFPAFNSYTCPSDSALGPTSTEGHGALSLSPLSRSPGSHADFLLTPLSPTASQGSPSFCVGSLEDDS
PFLSFAQMLRVGKAKADGWPKTAPKKDDNSLVPPAPVDSDGESDNSDRVPVPSFQNSFSQAIEAAFMKLD
TPATSDPLSEDRGGKKRKRQKQKLLFSTSVVHTK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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