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Report for CCDS19682.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19682.1 Public Mus musculus 5 Rflna 23 108 98 CCDS HistoryNCBI Gene:73121Re-query CCDS DB by CCDS ID:19682.1Re-query CCDS DB by GeneID:73121See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19682.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000036109.7 ENSMUSP00000048230.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000036109.7Link to Ensembl Protein Viewer:ENSMUSP00000048230.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000036109Re-query CCDS DB by Protein ID:ENSMUSP00000048230
Original member Current member EBI ENSMUST00000197746.1 ENSMUSP00000142824.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000197746.1Link to Ensembl Protein Viewer:ENSMUSP00000142824.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000197746Re-query CCDS DB by Protein ID:ENSMUSP00000142824
Original member Current member NCBI NM_028443.3 NP_082719.1 Accepted alive Link to Nucleotide Sequence:NM_028443.3Link to Protein Sequence:NP_082719.1Re-query CCDS DB by Nucleotide ID:NM_028443Re-query CCDS DB by Protein ID:NP_082719Link to BLAST:NP_082719.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082719.1 204 Q7TS73 204 100% 0 0

Chromosomal Locations for CCDS 19682.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 125003568 125003738 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 125010372 125010481 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 125011272 125011605 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (615 nt):
ATGGTGGGTCACCTGCATCTGCAGGCCATGGGGGACACGCGGGAGCAGAGCCGCGACGGCTTGCTGGACA
GTCCCGATTCAGGACTGCCCCCCAGTCCCAGTCCTAGCCCGCCCTTCTACGCCCTGTCGCCAGGCACCCT
GGACACCCGGACCACCACTGAAGCTCCAGCGGCTCCTTCCCTCTTCCAAACTCCCCCAGCTCTGGAGATG
AGGTCACGGTTGCTGCCTGTGTTCTTTGGGGAGAGCATCGAGGTGGACCCAGAACCCGCACATGAAATCC
GCTGCAACTCTGAGATCACCTACGCCTCAGAGAGATACTTCCGAGACAAGATCTTCTACGCTCCAGTGCC
CACGGTCACGGCCTACAGTGAGACCATAGTGGCGGCGCCCAACTGCACCTGGCGGAGCTACCGCAGCCAG
CTGACCCTGGAGCCTCGCCCACGGGCCCTGCGGTTCGGGAGCACCGCCATCATCTTCCCCAAACTGGCCC
GCAGCTCCTTCCGCACCACCCTGCACTGCAGCCTCGGCCAGCCTCGGCACTGGTACTCCTCCAGCCTGCA
GCTGCGGCGGTGCGGGGACCCTACGCCCGGTCCCAGCTGTCCTGATGTACTCTGA

Translation (204 aa):
MVGHLHLQAMGDTREQSRDGLLDSPDSGLPPSPSPSPPFYALSPGTLDTRTTTEAPAAPSLFQTPPALEM
RSRLLPVFFGESIEVDPEPAHEIRCNSEITYASERYFRDKIFYAPVPTVTAYSETIVAAPNCTWRSYRSQ
LTLEPRPRALRFGSTAIIFPKLARSSFRTTLHCSLGQPRHWYSSSLQLRRCGDPTPGPSCPDVL


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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