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Report for CCDS19735.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19735.1 Public Mus musculus 5 Tbl2 23 108 98 CCDS HistoryNCBI Gene:27368Re-query CCDS DB by CCDS ID:19735.1Re-query CCDS DB by GeneID:27368See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19735.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000153183.7 ENSMUSP00000115011.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000153183.7Link to Ensembl Protein Viewer:ENSMUSP00000115011.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000153183Re-query CCDS DB by Protein ID:ENSMUSP00000115011
Original member Current member NCBI NM_013763.3 NP_038791.2 Accepted alive Link to Nucleotide Sequence:NM_013763.3Link to Protein Sequence:NP_038791.2Re-query CCDS DB by Nucleotide ID:NM_013763Re-query CCDS DB by Protein ID:NP_038791Link to BLAST:NP_038791.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_038791.2 442 Q9R099 442 100% 0 0

Chromosomal Locations for CCDS 19735.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 135149738 135149864 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 135152935 135153056 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 135154314 135154498 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 135156368 135156519 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 135157532 135157658 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 135158604 135158756 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 135159220 135159682 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1329 nt):
ATGGAGCTGCCGCAGATGCCGGAGCTGATGGGGTTGTCCCTCCTGGTGGGTCTGCTGGCCTTGGTGGCCA
CGGCGGCTGTGGCGCGGGGCTGGCTGCGGGCCGAGGAGAAGCCCAGCCAGCCCGTCTGTCAGAAAGAAAA
CGAACCCAAGAAGTCAGGATCCAAGAAGCAGAAGCAGAATCAGCGGGTTCGTAAGGAGAAGCCTCAGCAG
CACAGCTTCACGCACCCCCTTCTGGCTGCAGCACTGAAGAGCCACAGTGGGAATATATCTTGCATGGACT
TCAGCAGCAACGGCAAGTATCTGGCCACCTGTGCGGATGACCGCACTGTCCGTATCTGGAGCACTAAAGA
TTTCCTTCAGCGGGAGCACCGCAGCATGAGAGCCAACGTGGAGCTGGACCATGCCACCTTGGTACGCTTC
AGCCCTGACTGCAGAGCCTTCATTGTTTGGCTGGCCAATGGGGACACCCTCCGTGTTTTTAAGATGACCA
AGCGGGAAGATGGGGGCTTTACTTTCACGGCCACACCAGAGGATTTCCCTAAAAAACACAAAGCGCCCAT
CATCAACATCGGCATTGCTGACACAGGGAAGTTCATCATGACGGCCTCCAGTGACACAACTGTCCTCATA
TGGAATCTGAAAGGTCAGGTGCTTTCCACGATCAACACTAACCAGATGAACAACAGTCACGCAGTTATCT
CCCCATGTAGCAGGTTTGTGGGTTCGTGTGGCTTCACCCCAGATGTGAAGGTCTGGGAGGTCTGTTTCGG
GAAGAAAGGAGAGTTCCAGGAGGTGCTGCGAGCCTTTGAACTGAAGGGTCACTCTGCATCTGTCCACTCT
TTCGCTTTCTCCAATGACTCTCGAAGGATGGCCTCCGTCTCCAAGGATGGGACATGGAAGCTATGGGACA
CAGATGTGGAGTACAAGAAGCAGCAGGACCCCTACTTGCTACGGACAGGCCGCTTTGAAGAGGCGAGCAC
CATGCCTTGCCGCCTGGCACTCTCCCCTGATACCCATGTCCTGGCCTTGGCCACTGGCACCAATATTCAT
CTCTTCAACACACGCCGCGGGGAGAAGGAGGAGTACTTTGAGTGTGTCCATGGGGAGTGTATTGCTGACT
TGACTTTTGACATCACTGGCCGCTTCCTGGCCTCCTGTGGGGACCGTGCAGTGCGGCTCTTCCACAATAC
CCCTGGCCACCGGGCTGTGGTGGAGGAGATGCAGAGCCTCCTGAAGCGGGCATCCAGCGAAAGTACCCGC
CAGAGGCTGCAGCAACAGCTAACCCAGGCCCAAGAGGCCCTCAAGAGCCTGGGTGCCCTGAAGAAGTGA

Translation (442 aa):
MELPQMPELMGLSLLVGLLALVATAAVARGWLRAEEKPSQPVCQKENEPKKSGSKKQKQNQRVRKEKPQQ
HSFTHPLLAAALKSHSGNISCMDFSSNGKYLATCADDRTVRIWSTKDFLQREHRSMRANVELDHATLVRF
SPDCRAFIVWLANGDTLRVFKMTKREDGGFTFTATPEDFPKKHKAPIINIGIADTGKFIMTASSDTTVLI
WNLKGQVLSTINTNQMNNSHAVISPCSRFVGSCGFTPDVKVWEVCFGKKGEFQEVLRAFELKGHSASVHS
FAFSNDSRRMASVSKDGTWKLWDTDVEYKKQQDPYLLRTGRFEEASTMPCRLALSPDTHVLALATGTNIH
LFNTRRGEKEEYFECVHGECIADLTFDITGRFLASCGDRAVRLFHNTPGHRAVVEEMQSLLKRASSESTR
QRLQQQLTQAQEALKSLGALKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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