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Report for CCDS19764.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19764.1 Under review, update Mus musculus 5 Ufsp1 23 108 98 CCDS HistoryNCBI Gene:70240Re-query CCDS DB by CCDS ID:19764.1Re-query CCDS DB by GeneID:70240See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG
Non-AUG initiation codon

Sequence IDs included in CCDS 19764.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000052825.6 ENSMUSP00000056156.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000052825.6Link to Ensembl Protein Viewer:ENSMUSP00000056156.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000052825Re-query CCDS DB by Protein ID:ENSMUSP00000056156
Original member NCBI NM_027356.2 NP_081632.1 Updated not alive Link to Nucleotide Sequence:NM_027356.2Link to Protein Sequence:NP_081632.1Re-query CCDS DB by Nucleotide ID:NM_027356Re-query CCDS DB by Protein ID:NP_081632
Current member NCBI NM_027356.3 NP_081632.2 Pending alive Link to Nucleotide Sequence:NM_027356.3Link to Protein Sequence:NP_081632.2Re-query CCDS DB by Nucleotide ID:NM_027356Re-query CCDS DB by Protein ID:NP_081632Link to BLAST:NP_081632.2

Chromosomal Locations for CCDS 19764.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 137294790 137295443 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (654 nt):
ATGACAGCTGCTCTACCGAGCACCCTGGAGCTGCTGAAGGACGTGCACCTGGGCCTGCCTGTGCCCTGCC
ATGATCCCGCCCGACTGGCCCTCCTCTCAGGCCACTACCTTTACTATCACTATGGTTGCGATGGACTGGA
TGACCGTGGCTGGGGATGCGGCTACCGCACCCTGCAGACGCTGTGCTCCTGGCCAGGGGGCCAGTCCTCG
GGCGTGCCTGGACTGCCAGCCTTGCAGGGAGCCCTAGAGGCCATGGGCGACAAGCCCCCCGGATTCCGGG
GCTCCCGTAACTGGATCGGCTGTGTAGAGGCCAGTCTCTGCCTAGAACACTTCGGAGGACCTCAAGGGCG
CCTATGCCACTTGCCCCGCGGAGTAGGGCTTAGGGGAGAAGAGGAGCGGCTTTATTCACACTTTACAACG
GGTGGGGGCCCAGTAATGGTAGGAGGAGATGCAGATGCCCAGTCCAAGGCCCTGCTGGGGATCTGTGAGG
GGCCAGGTTCAGAAGTCTATGTCTTGATACTGGACCCACACTACTGGGGCACTCCAAAAAACCGTTGTGA
ACTACAAGCTGCTGGATGGGTGGGCTGGCAAAAGGTAAAAAGCGTCTTTGATTCCAATTCCTTCTACAAC
TTGTGCTTCACCAGAAATCTCTGA

Translation (217 aa):
MTAALPSTLELLKDVHLGLPVPCHDPARLALLSGHYLYYHYGCDGLDDRGWGCGYRTLQTLCSWPGGQSS
GVPGLPALQGALEAMGDKPPGFRGSRNWIGCVEASLCLEHFGGPQGRLCHLPRGVGLRGEEERLYSHFTT
GGGPVMVGGDADAQSKALLGICEGPGSEVYVLILDPHYWGTPKNRCELQAAGWVGWQKVKSVFDSNSFYN
LCFTRNL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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