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Report for CCDS19805.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19805.1 Public Mus musculus 5 Get4 23 108 98 CCDS HistoryNCBI Gene:67604Re-query CCDS DB by CCDS ID:19805.1Re-query CCDS DB by GeneID:67604See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19805.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000026976.11 ENSMUSP00000026976.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000026976.11Link to Ensembl Protein Viewer:ENSMUSP00000026976.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000026976Re-query CCDS DB by Protein ID:ENSMUSP00000026976
Original member Current member NCBI NM_026269.2 NP_080545.2 Accepted alive Link to Nucleotide Sequence:NM_026269.2Link to Protein Sequence:NP_080545.2Re-query CCDS DB by Nucleotide ID:NM_026269Re-query CCDS DB by Protein ID:NP_080545Link to BLAST:NP_080545.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080545.2 327 Q9D1H7-1 327 100% 0 0

Chromosomal Locations for CCDS 19805.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 139252465 139252619 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 139262481 139262559 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 139262870 139262951 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 139263479 139263628 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 139265627 139265765 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 139267004 139267144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 139267227 139267302 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 139267403 139267475 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 139268981 139269069 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (984 nt):
ATGGCGGCGGCGGCGGCGATGGCAGAGCAGGAGGGCGCCCGCAACGGCGCCCGCAACCGCGGCGGCGTCC
AGCGCGTGGAGGGCAAGCTGCGTGCTAGCGTCGAGAAGGGCGACTACTACGAGGCGCACCAGATGTACCG
GACCCTCTTCTTCAGATACATGTCTCAGAGCAAACATGCAGAGGCCCGGGAGCTTATGTACTCAGGAGCA
TTGCTCTTCTTCAGTCATGGCCAGCAGAACAGTGCAGCTGACCTGTCCATGCTGGTCCTCGAATCCCTGG
AAAAGGCCGAGGTGGACGTAGCTGATGAGCTTTTGGAAAATCTGGCTAAAGTGTTCAGTTTGATGGATCC
AAATTCTCCTGAACGAGTAGCTTTTGTGTCCAGAGCCCTGAAGTGGTCCAGTGGAGGGTCTGGGAAACTG
GGCCATCCTCGACTCCACCAGCTGCTGGCCCTCACATTATGGAAAGAGCAAAATTACTGTGAGTCTCGGT
ATCACTTTCTGCACTCCAGTGATGGCGAGGGCTGCGCCAACATGCTGGTCGAGTACTCTACTGCCCGAGG
CTTCCGAAGTGAGGTGGACATGTTCGTGGCTCAGGCTGTGCTACAGTTTCTCTGTTTGAAAAATAAGAAC
AGTGCACTGGTGGTCTTTACAACGTACACACAGAAGCATCCATCCATCGAGGATGGGCCGCCCTTTGTTC
AGCCCCTGCTCAATTTCATCTGGTTTCTGCTGCTGGCCGTGGACGGTGGCAAGCTGGCTGTCTTCACGGT
GCTGTGCGAGCAGTACCAGCCGTCCCTGCGGAGGGACCCCATGTACAACGAGTACCTCGACAGGATCGGA
CAACTCTTCTTCGGTGTGCCGCCAAAGCAGACATCCTCCTATGGAGGCTTGCTAGGGAACCTGCTGAGCA
GCCTCATGGGCTCCTCAGAGCAGGAAGAGGGGGAAGAGAGCCAGGATGACAGCAGCCCCATCGAGCTGGA
CTGA

Translation (327 aa):
MAAAAAMAEQEGARNGARNRGGVQRVEGKLRASVEKGDYYEAHQMYRTLFFRYMSQSKHAEARELMYSGA
LLFFSHGQQNSAADLSMLVLESLEKAEVDVADELLENLAKVFSLMDPNSPERVAFVSRALKWSSGGSGKL
GHPRLHQLLALTLWKEQNYCESRYHFLHSSDGEGCANMLVEYSTARGFRSEVDMFVAQAVLQFLCLKNKN
SALVVFTTYTQKHPSIEDGPPFVQPLLNFIWFLLLAVDGGKLAVFTVLCEQYQPSLRRDPMYNEYLDRIG
QLFFGVPPKQTSSYGGLLGNLLSSLMGSSEQEEGEESQDDSSPIELD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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