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Report for CCDS19983.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19983.1 Public Mus musculus 6 Podxl 23 108 98 CCDS HistoryNCBI Gene:27205Re-query CCDS DB by CCDS ID:19983.1Re-query CCDS DB by GeneID:27205See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19983.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000026698.7 ENSMUSP00000026698.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000026698.7Link to Ensembl Protein Viewer:ENSMUSP00000026698.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000026698Re-query CCDS DB by Protein ID:ENSMUSP00000026698
Original member Current member NCBI NM_013723.3 NP_038751.2 Accepted alive Link to Nucleotide Sequence:NM_013723.3Link to Protein Sequence:NP_038751.2Re-query CCDS DB by Nucleotide ID:NM_013723Re-query CCDS DB by Protein ID:NP_038751Link to BLAST:NP_038751.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_038751.2 503 Q9R0M4 503 100% 0 0

Chromosomal Locations for CCDS 19983.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 31523022 31523219 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 31524305 31524472 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 31524670 31524731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 31524939 31525092 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 31526202 31526273 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 31526547 31526755 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 31528458 31529036 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 31563579 31563648 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1512 nt):
ATGCCTCCCACTACGGCGCTCTCCGCGCTGCTGCTGCTGCTACTGTCGCCTGCATCTCACTCCCATAATG
GAAATGAGACTAGCACATCTGCTATCAAATCTAGCACTGTCCAGAGCCACCAAAGTGCCACAACATCAAC
AGAAGTCACAACTGGTCACCCAGTGGCATCTACACTTGCTTCAACCCAGCCAAGCAACCCTACACCATTC
ACAACCTCAACCCAATCTCCATCTATGCCGACCTCCACCCCAAACCCCACGAGCAATCAAAGCGGTGGCA
ATCTGACTTCCAGTGTCTCCGAGGTGGACAAGACTAAAACAAGCTCTCCCAGTAGCACGGCCTTCACCAG
TAGCAGTGGACAAACAGCCTCCTCTGGAGGCAAGAGCGGTGACAGTTTTACCACAGCCCCAACAACCACT
TTGGGGCTAATCAACGTCTCTTCTCAGCCTACTGACCTTAATACCACCTCAAAGCTTCTTTCTACCCCCA
CAACAGACAACACAACAAGCCCTCAGCAGCCTGTGGATTCTTCACCGAGCACAGCGAGCCATCCTGTGGG
GCAGCATACCCCTGCTGCTGTTCCCAGCAGCTCTGGCTCCACGCCCAGCACTGACAACTCTACACTGACA
TGGAAGCCCACTACACACAAACCATTGGGCACCTCTGAAGCCACTCAGCCCCTCACCAGCCAGACACCAG
GCATCACTACATTGCCCGTCTCCACACTGCAACAGTCTATGGCGTCTACAGTGGGAACTACGACTGAAGA
GTTCACACACCTCATCTCTAATGGGACTCCCGTGGCCCCTCCAGGCCCCAGCACACCCTCTCCCATCTGG
GCCTTTGGAAATTACCAGCTAAACTGTGAACCTCCCATAAGGCCAGATGAGGAACTCCTTATTCTGAACC
TCACAAGAGCCAGCCTTTGCGAAAGGAGCCCTCTGGATGAGAAAGAGAAACTCGTGGAACTGCTGTGTCA
CTCAGTCAAAGCGTCCTTCAAGCCAGCTGAGGATTTGTGCACTCTACATGTGGCCCCTATTCTAGATAAC
CAGGCGGTGGCAGTGAAGAGAATCATTATCGAGACGAAGCTTTCTCCTAAGGCCGTGTATGAGCTACTGA
AGGACAGATGGGATGACCTGACAGAGGCCGGAGTCAGTGACATGAAGCTGGGGAAGGAAGGGCCTCCAGA
GGTCAATGAGGACCGCTTCAGCCTGCCGCTCATCATCACCATCGTCTGCATGGCATCCTTCCTGCTCCTT
GTTGCTGCCCTCTACGGCTGCTGTCACCAGCGGATCTCCCAGAGGAAGGACCAGCAACGGCTCACAGAGG
AGCTGCAGACAGTGGAGAATGGTTACCATGACAACCCAACCTTGGAAGTGATGGAGACTCCTTCTGAGAT
GCAGGAGAAGAAGGTGGTCAACCTTAATGGGGAGCTGGGGGACAGTTGGATCGTCCCTCTGGACAACTTG
ACCAAGGATGACCTAGATGAGGAGGAAGACACACACCTCTGA

Translation (503 aa):
MPPTTALSALLLLLLSPASHSHNGNETSTSAIKSSTVQSHQSATTSTEVTTGHPVASTLASTQPSNPTPF
TTSTQSPSMPTSTPNPTSNQSGGNLTSSVSEVDKTKTSSPSSTAFTSSSGQTASSGGKSGDSFTTAPTTT
LGLINVSSQPTDLNTTSKLLSTPTTDNTTSPQQPVDSSPSTASHPVGQHTPAAVPSSSGSTPSTDNSTLT
WKPTTHKPLGTSEATQPLTSQTPGITTLPVSTLQQSMASTVGTTTEEFTHLISNGTPVAPPGPSTPSPIW
AFGNYQLNCEPPIRPDEELLILNLTRASLCERSPLDEKEKLVELLCHSVKASFKPAEDLCTLHVAPILDN
QAVAVKRIIIETKLSPKAVYELLKDRWDDLTEAGVSDMKLGKEGPPEVNEDRFSLPLIITIVCMASFLLL
VAALYGCCHQRISQRKDQQRLTEELQTVENGYHDNPTLEVMETPSEMQEKKVVNLNGELGDSWIVPLDNL
TKDDLDEEEDTHL


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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