NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS19995.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19995.2 Public Mus musculus 6 Agbl3 23 108 98 CCDS HistoryNCBI Gene:76223Re-query CCDS DB by CCDS ID:19995.2Re-query CCDS DB by GeneID:76223See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 19995.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000115017.7 ENSMUSP00000110669.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000115017.7Link to Ensembl Protein Viewer:ENSMUSP00000110669.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000115017Re-query CCDS DB by Protein ID:ENSMUSP00000110669
Original member Current member NCBI NM_178630.4 NP_848745.2 Accepted alive Link to Nucleotide Sequence:NM_178630.4Link to Protein Sequence:NP_848745.2Re-query CCDS DB by Nucleotide ID:NM_178630Re-query CCDS DB by Protein ID:NP_848745Link to BLAST:NP_848745.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_848745.2 1001 Q8CDP0-3 1001 100% 0 0

Chromosomal Locations for CCDS 19995.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 34782156 34782218 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 34783570 34783630 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 34785191 34785376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 34793882 34793989 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 34798194 34798332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 34799133 34799909 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 34803443 34803611 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 34812832 34812958 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 34814384 34814484 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 34814711 34814823 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 34823018 34823084 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 34824720 34824800 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 34828192 34828249 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 34832505 34832576 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 34836813 34836858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 34839325 34839509 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 34846755 34846983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 34857480 34857903 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3006 nt):
ATGTCAGAAGATTCAGAGGAGGAAGACTACTCAGATAGAAGCATCAGTGATGACGATGACTTGGATGAGG
ATTCCTTCATGAAATTTGTAAGTGATGATATTCATCCGTGCACACTACTGGCAGCTGATTCTATTGGTGA
CCCATTCTTCCCTCGGACTACACAAATTTTATTGGAGTATCAGCTAGGAAGATGGGTACCACGCCTTCGC
GGACCACGAGATTTATATGGTGTCTCTTCTTCTGGTCCACTGAGCCCAACACGGTGGCCATACCACTGTG
AGGTCATTGATGAAAAAGTCCAGCATATTGAATGGACTCCCTTTGTCCCTGAGCCAGTGTATGTCCCGAC
AGGCCTGGAAATAGAGCCTGTTTACCCAAACTCCAAGGAAGATACTGTGGTTTATTTAGCTGAAGATGCT
TACAAAGAGCCCTGTTTTGTGTATTCCCGAGTTGGGGGTAACCGAACATCCTTGAAACAACCTGTGGATA
ACTGTGACAACACGCTGGTGTTTGAAGCAAGGTTTGAGAGTGGTAATCTACAGAAGGTAGTCAAAGTTGC
AGATCATGAATACGAGTTGACTGTGCGCCCAGACCTCTTCACAAATAAGCACACTCAGTGGTACTATTTC
CAGGTCACTAATACCCAAGCAGAAATAGTCTACAGATTCACTATTGTCAACTTTACCAAGCCTGCTAGTC
TTTACAATCGGGGTATGAAGCCATTGTTCTATTCTGAAAAAGAGGCCAAAACCCATAACATTGGCTGGCA
GAGAATAGGAGATCAAATCAAGTATTATAAAAATAACCTTGGGCAAGATGGGCGCCATTTTTTTTCTCTT
ACGTGGACATTTCAGTTTCCACACAGCCAGGATACGTGCTACTTTGCTCACTGCTATCCATACACTTACT
CCAACCTTCAAGAATACCTGTCTGGCATCAACAGTGACCCAGTAAGATCAAAGTTTTGTAAAATACGTGT
CTTGTGTCACACACTTGCCAGGAATATGGTGTATGTCTTGACAATAACTACTCCCTTGAAGACTAGTGAC
TCAAAGCGCAAGGCTGTGATTTTGACTGCAAGGGTCCATCCAGGAGAGACCAACAGCTCTTGGATCATGA
AAGGCTTCCTGGATTATATTTTAGGAGACTCAAGTGATGCACGCTTGCTTCGGGACACTTTCATCTTCAA
GGTGGTACCCATGCTGAATCCAGATGGCGTGATTGTGGGAAATTATCGATGTTCCTTAGCTGGACGGGAT
TTAAACCGTAATTACACATCGCTCCTGAAGGAGTCTTTCCCTTCTGTTTGGTATACAAGGAACATGATCA
ATAGGTTAATGGAGAAACGAGAGGTTATTTTATATTGTGATCTTCATGGCCATAGTAGGAAACAGAATAT
TTTCATGTATGGTTGTGATGGTAGCAGCAGATCTAAAACAAAAGGATTATACTTACAGCAACGGATCTTT
CCACTCATGCTGAGCAAAAATTGCCCAAATATATTTTCCTTCTCAGCTTGCAAGTTTAACGTTCAGAAAA
GCAAAGAGGGGACAGGAAGGGTTGTAATGTGGAAGATGGGCATCAGGAACAGCTTCACGCTGGAGGCCAC
CTTCTGCGGATCTACTCTGGGCAATAAACGAGGCACTCATTTCGGCACAAAAGATTTAGAGTCGATGGGA
TATCATTTTTGTGATTCTCTGTTGGACTACTGTGATCCTGACAGGAGCAAATATTATCAGTGCTTGAAAG
AATTAGAAGAAATGGAGAAACATTTGAGCTCCGAAAGAGTCTCTGATAACACAGATACTTCTCTAGTAGA
AATTTCTTTGGATGTAGAGTCTAGTAGTCGAGGCTCTGACAGCTCAGAGTCCAATGACACTCAGACTTAC
CTTCTCAAGGTGACCTCTCAGGCAAGAAACAAGAAAAAGTATCTGAAAACAAAGAGGGAAAGAAATGCCA
TCCTAGCAAACTGCCAGAATAACATGCAAGAGGTTTATGGCAAAGAACATTTACTCCAAAGACACGATGA
ATCAAATTCTGATGGGAATGATCCAAGGATAGATGCACCAGATGTTTATGTGGCTCACTGTTTCAGAAGA
CCGTTGCCTAACCAAGGCGTGGTGAAAATTCCTGGACAAAGGTTTTATCCCGGAAAAACATGGTCCAGCT
CCCAGCGTATGATTAAGAGTCTTAACAAAGACCATAGGACATGTATTTTAGAAACTTGTAAGAATCCAAT
CCAGGAAGTTCAGTCCAGAGGAATCAATATACATGAAAGTTGTTTCAAAATGGCGAAATGTCCTATGAAC
AAAAGACCTTCACATTGGATTGAGAAGACAAGAATACCAACAGAGTCACATCACCAGTTGAAAAGCAAAG
CAAAAAGATGCTCGTCTTTCCAAAGCAAGAGGACTGGGACGAATTGGACAGATGATGAGAAACGAATTTA
CAGGGATAAAAGAATAGCTCAAACTCAGGAAATATTAAAGTATTTACTCCCTATCGTGGAGTCCTCTCAA
AACAGGAAATCTACTCAAATGAACAATCTAATCAACCCGATAGCCAACTTGCAACAGCATCAACTTATTC
CAACTGCTTGCATAAATAGAAGAAGATACAGCATACCTTGGACACCAACCAGAAATCTCCCTTTTAAAGC
CCAAAGGAATCTTATGACAGACACCTCCGAATGGCTCCAGTCTGTGCCCCTTGGGTCATTTGAAAGTTTG
TTACCTCTCTGCAATCTTCAGAAGAAGACAAAACATTTTGAACTCTGGGGCAAAAAGGCTAAGGATGTGC
AGCTTGCCACCAGCCAATGGGAGGCTGTGCCCTTGAGTTCTAACATGGATGCAAGTATCATCAGGGGTAA
CAGTGTTCTGCAGCCTAAAGAATTCACCATGAGGAGCTCTAAGCAGAGAATTCCTTACCTAACCAAAACC
AGCAAGAAACCCAGTGAGAGTGATGGCCTGCTCACCTTCCAGCTGAAGATTCACAGGAACAGTTAA

Translation (1001 aa):
MSEDSEEEDYSDRSISDDDDLDEDSFMKFVSDDIHPCTLLAADSIGDPFFPRTTQILLEYQLGRWVPRLR
GPRDLYGVSSSGPLSPTRWPYHCEVIDEKVQHIEWTPFVPEPVYVPTGLEIEPVYPNSKEDTVVYLAEDA
YKEPCFVYSRVGGNRTSLKQPVDNCDNTLVFEARFESGNLQKVVKVADHEYELTVRPDLFTNKHTQWYYF
QVTNTQAEIVYRFTIVNFTKPASLYNRGMKPLFYSEKEAKTHNIGWQRIGDQIKYYKNNLGQDGRHFFSL
TWTFQFPHSQDTCYFAHCYPYTYSNLQEYLSGINSDPVRSKFCKIRVLCHTLARNMVYVLTITTPLKTSD
SKRKAVILTARVHPGETNSSWIMKGFLDYILGDSSDARLLRDTFIFKVVPMLNPDGVIVGNYRCSLAGRD
LNRNYTSLLKESFPSVWYTRNMINRLMEKREVILYCDLHGHSRKQNIFMYGCDGSSRSKTKGLYLQQRIF
PLMLSKNCPNIFSFSACKFNVQKSKEGTGRVVMWKMGIRNSFTLEATFCGSTLGNKRGTHFGTKDLESMG
YHFCDSLLDYCDPDRSKYYQCLKELEEMEKHLSSERVSDNTDTSLVEISLDVESSSRGSDSSESNDTQTY
LLKVTSQARNKKKYLKTKRERNAILANCQNNMQEVYGKEHLLQRHDESNSDGNDPRIDAPDVYVAHCFRR
PLPNQGVVKIPGQRFYPGKTWSSSQRMIKSLNKDHRTCILETCKNPIQEVQSRGINIHESCFKMAKCPMN
KRPSHWIEKTRIPTESHHQLKSKAKRCSSFQSKRTGTNWTDDEKRIYRDKRIAQTQEILKYLLPIVESSQ
NRKSTQMNNLINPIANLQQHQLIPTACINRRRYSIPWTPTRNLPFKAQRNLMTDTSEWLQSVPLGSFESL
LPLCNLQKKTKHFELWGKKAKDVQLATSQWEAVPLSSNMDASIIRGNSVLQPKEFTMRSSKQRIPYLTKT
SKKPSESDGLLTFQLKIHRNS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH