NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS2000.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2000.1 Public Homo sapiens 2 KRCC1 24 110 108 CCDS HistoryNCBI Gene:51315Re-query CCDS DB by CCDS ID:2000.1Re-query CCDS DB by GeneID:51315See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2000.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000347055.4 ENSP00000340083.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000347055.4Link to Ensembl Protein Viewer:ENSP00000340083.3Re-query CCDS DB by Nucleotide ID:ENST00000347055Re-query CCDS DB by Protein ID:ENSP00000340083
Original member Current member EBI ENST00000672766.1 ENSP00000499834.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000672766.1Link to Ensembl Protein Viewer:ENSP00000499834.1Re-query CCDS DB by Nucleotide ID:ENST00000672766Re-query CCDS DB by Protein ID:ENSP00000499834
Original member Current member NCBI NM_001304526.2 NP_001291455.1 Accepted alive Link to Nucleotide Sequence:NM_001304526.2Link to Protein Sequence:NP_001291455.1Re-query CCDS DB by Nucleotide ID:NM_001304526Re-query CCDS DB by Protein ID:NP_001291455Link to BLAST:NP_001291455.1
Original member Current member NCBI NM_016618.3 NP_057702.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_016618.3Link to Protein Sequence:NP_057702.1Re-query CCDS DB by Nucleotide ID:NM_016618Re-query CCDS DB by Protein ID:NP_057702Link to BLAST:NP_057702.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001291455.1 259 Q9NPI7 259 100% 0 0
NP_057702.1 259 Q9NPI7 259 100% 0 0

Chromosomal Locations for CCDS 2000.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 88027784 88028563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (780 nt):
ATGAAGCATTCAAAGAAGACATATGACTCTTTTCAAGATGAACTTGAAGATTATATTAAAGTACAGAAAG
CCAGAGGCTTAGAGCCAAAGACTTGTTTCAGAAAGATGAAAGGGGACTATTTGGAAACCTGTGGGTACAA
AGGAGAGGTTAATTCCAGACCCACGTATAGAATGTTTGACCAGAGACTCCCATCTGAAACCATCCAGACC
TACCCAAGATCATGCAATATTCCACAAACAGTGGAAAATCGGTTGCCTCAGTGGTTACCAGCCCATGACA
GCAGATTGAGACTAGACTCTCTGAGCTACTGTCAGTTCACGAGGGACTGTTTCTCAGAAAAACCAGTACC
CCTGAACTTTAATCAACAAGAATATATTTGTGGCTCACATGGTGTAGAACATAGAGTTTACAAGCACTTC
TCCTCAGATAACAGTACCAGTACTCATCAAGCCAGTCACAAACAGATACATCAGAAGAGGAAAAGGCACC
CAGAGGAAGGCAGAGAAAAATCAGAGGAGGAGCGGTCTAAGCATAAGAGAAAAAAAAGCTGCGAGGAAAT
TGACTTAGACAAACACAAGAGCATCCAAAGAAAGAAAACAGAGGTGGAAATAGAAACCGTACATGTCAGT
ACAGAAAAGCTTAAGAATCGAAAGGAGAAAAAAAGCCGAGATGTAGTCTCTAAGAAAGAGGAACGTAAGC
GTACAAAAAAGAAAAAGGAACAAGGCCAAGAAAGGACAGAGGAGGAAATGCTTTGGGACCAGTCTATTCT
TGGATTTTGA

Translation (259 aa):
MKHSKKTYDSFQDELEDYIKVQKARGLEPKTCFRKMKGDYLETCGYKGEVNSRPTYRMFDQRLPSETIQT
YPRSCNIPQTVENRLPQWLPAHDSRLRLDSLSYCQFTRDCFSEKPVPLNFNQQEYICGSHGVEHRVYKHF
SSDNSTSTHQASHKQIHQKRKRHPEEGREKSEEERSKHKRKKSCEEIDLDKHKSIQRKKTEVEIETVHVS
TEKLKNRKEKKSRDVVSKKEERKRTKKKKEQGQERTEEEMLWDQSILGF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH