NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS20032.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20032.1 Public Mus musculus 6 Tas2r108 23 108 98 CCDS HistoryNCBI Gene:57253Re-query CCDS DB by CCDS ID:20032.1Re-query CCDS DB by GeneID:57253See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 20032.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000038750.6 ENSMUSP00000044089.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000038750.6Link to Ensembl Protein Viewer:ENSMUSP00000044089.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000038750Re-query CCDS DB by Protein ID:ENSMUSP00000044089
Original member Current member NCBI NM_020502.1 NP_065248.1 Accepted alive Link to Nucleotide Sequence:NM_020502.1Link to Protein Sequence:NP_065248.1Re-query CCDS DB by Nucleotide ID:NM_020502Re-query CCDS DB by Protein ID:NP_065248Link to BLAST:NP_065248.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_065248.1 297 Q9JKT3 297 100% 0 0

Chromosomal Locations for CCDS 20032.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 40493592 40494485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (894 nt):
ATGCTCTGGGAACTGTATGTATTTGTGTTTGCTGCCTCGGTTTTTTTAAATTTTGTAGGAATCATTGCAA
ATCTATTTATTATAGTGATAATTATTAAGACTTGGGTCAACAGTCGCAGAATTGCCTCTCCGGATAGGAT
CCTGTTCAGCTTGGCCATCACTAGATTCCTGACTTTGGGGTTGTTTCTACTGAACAGTGTCTACATTGCT
ACAAATACTGGAAGGTCAGTCTACTTTTCCACATTTTTTCTATTGTGTTGGAAGTTTCTGGATGCAAACA
GTCTCTGGTTAGTGACCATTCTGAACAGCTTGTATTGTGTGAAGATTACTAATTTTCAACACCCAGTGTT
TCTCCTGTTGAAACGGACTATCTCTATGAAGACCACCAGCCTGCTGTTGGCCTGTCTTCTGATTTCAGCC
CTCACCACTCTCCTATATTATATGCTCTCACAGATATCACGTTTTCCTGAACACATAATTGGGAGAAATG
ACACGTCATTTGACCTCAGTGATGGTATCTTGACGTTAGTAGCCTCTTTGGTCCTGAACTCACTTCTACA
GTTTATGCTCAATGTGACTTTTGCTTCCTTGTTAATACATTCCTTGAGAAGACATATACAGAAGATGCAG
AGAAACAGGACCAGCTTTTGGAATCCCCAGACGGAGGCTCACATGGGTGCTATGAGGCTGATGATCTGTT
TCCTCGTGCTCTACATTCCATATTCAATTGCTACCCTGCTCTATCTTCCTTCCTATATGAGGAAGAATCT
GAGAGCCCAGGCCATTTGCATGATTATTACTGCTGCTTACCCTCCAGGACATTCTGTCCTCCTCATTATC
ACACATCATAAACTGAAAGCTAAAGCAAAGAAGATTTTCTGTTTCTACAAGTAG

Translation (297 aa):
MLWELYVFVFAASVFLNFVGIIANLFIIVIIIKTWVNSRRIASPDRILFSLAITRFLTLGLFLLNSVYIA
TNTGRSVYFSTFFLLCWKFLDANSLWLVTILNSLYCVKITNFQHPVFLLLKRTISMKTTSLLLACLLISA
LTTLLYYMLSQISRFPEHIIGRNDTSFDLSDGILTLVASLVLNSLLQFMLNVTFASLLIHSLRRHIQKMQ
RNRTSFWNPQTEAHMGAMRLMICFLVLYIPYSIATLLYLPSYMRKNLRAQAICMIITAAYPPGHSVLLII
THHKLKAKAKKIFCFYK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH