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Report for CCDS20097.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20097.1 Public Mus musculus 6 Pdia4 23 108 98 CCDS HistoryNCBI Gene:12304Re-query CCDS DB by CCDS ID:20097.1Re-query CCDS DB by GeneID:12304See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20097.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000077290.8 ENSMUSP00000076521.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000077290.8Link to Ensembl Protein Viewer:ENSMUSP00000076521.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000077290Re-query CCDS DB by Protein ID:ENSMUSP00000076521
Original member Current member NCBI NM_009787.2 NP_033917.2 Accepted alive Link to Nucleotide Sequence:NM_009787.2Link to Protein Sequence:NP_033917.2Re-query CCDS DB by Nucleotide ID:NM_009787Re-query CCDS DB by Protein ID:NP_033917Link to BLAST:NP_033917.2

Chromosomal Locations for CCDS 20097.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 47796488 47796903 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 47798365 47798598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 47799186 47799342 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 47800938 47801089 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 47803431 47803589 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 47803705 47803910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 47806506 47806644 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 47807006 47807211 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 47808175 47808343 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 47813217 47813304 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1926 nt):
ATGAAGCTCCGGAAAGCTTGGCTGTTGGTCCTGCTCTTGGCGCTGACACAGCTGCTGGCTGCTGCGAGCG
CCGGAGATGCACACGAAGATACTTCAGATACAGAAAATGCCACTGAGGAGGAAGAGGAGGAAGAGGAAGA
GGATGACGATGACTTGGAAGTTAAGGAAGAAAATGGTGTTTGGGTCTTAAATGATGGGAACTTTGATAAC
TTTGTGGCTGACAAAGATACAGTGCTACTGGAGTTCTATGCACCATGGTGTGGACACTGCAAGCAGTTTG
CTCCAGAATATGAGAAAATTGCCAGTACTTTGAAGGATAATGATCCTCCCATTGCTGTAGCGAAGATCGA
TGCAACCTCAGCATCCATGCTAGCCAGCAAATTTGATGTGAGTGGCTACCCCACCATCAAGATCCTGAAG
AAGGGACAGGCCGTTGACTATGATGGCTCCAGGACCCAGGAAGAAATTGTTGCCAAAGTCAGAGAAGTTT
CCCAGCCTGATTGGACACCTCCACCTGAAGTCACTCTTTCATTGACTAAAGATAACTTTGACGATGTTGT
AAATAATGCAGACATTATTTTGGTGGAGTTCTATGCCCCGTGGTGTGGACACTGCAAGAAACTTGCCCCT
GAGTATGAGAAAGCTGCCAAGGAGCTCAGCAAGCGCTCTCCCCCAATTCCCTTAGCCAAAGTGGACGCCA
CCGAACAGACAGACCTGGCTAAGAGGTTTGATGTCTCTGGCTACCCGACTTTGAAAATTTTCCGCAAAGG
AAGGCCTTTTGACTACAATGGCCCACGAGAGAAATATGGGATTGTTGACTACATGATTGAGCAGTCTGGG
CCTCCCTCAAAGGAGATCCTGACCCTGAAGCAGGTCCAGGAGTTCCTGAAGGATGGAGATGATGTGGTCA
TCATTGGGCTCTTTCAGGGAGATGGTGACCCGGCCTACTTGCAGTATCAGGATGCTGCTAACAACCTGAG
AGAAGATTACAAGTTTCACCACACTTTCAGCCCTGAAATAGCCAAGTTCCTGAAAGTCTCCCTGGGGAAG
TTGGTGCTGACACACCCTGAGAAGTTCCAGTCCAAGTATGAGCCCAGGTTCCACGTGATGGATGTTCAGG
GCTCTACAGAAGCATCAGCCATTAAGGACTATGTAGTGAAACATGCCTTGCCCCTGGTGGGCCATCGTAA
GACTTCTAATGATGCTAAGCGGTACAGCAAACGCCCCCTGGTGGTTGTATACTACAGTGTGGACTTCAGC
TTTGATTACAGAGCTGCTACTCAGTTTTGGCGTAACAAAGTCCTAGAGGTGGCCAAGGACTTCCCTGAGT
ATACCTTCGCCATTGCTGACGAGGAAGACTATGCCACGGAGGTGAAGGACCTGGGGCTCAGTGAGAGTGG
AGAGGATGTCAATGCAGCCATCCTAGACGAGAGCGGGAAGAAGTTTGCCATGGAGCCAGAGGAGTTTGAT
TCAGACACTCTCCGGGAATTTGTCACAGCTTTTAAAAAAGGAAAACTAAAGCCAGTCATCAAATCACAGC
CAGTACCCAAGAACAACAAGGGACCAGTCAAGGTGGTGGTGGGAAAGACCTTTGATGCCATTGTGATGGA
CCCCAAAAAGGACGTCCTCATTGAATTCTATGCACCCTGGTGTGGGCACTGCAAGCAGCTAGAGCCTATC
TATACCAGCCTAGGCAAGAAATACAAGGGCCAGAAGGACCTGGTCATCGCCAAGATGGATGCTACTGCCA
ACGACATCACCAACGACCAATATAAGGTGGAGGGCTTCCCTACCATCTATTTTGCTCCCAGTGGGGACAA
AAAGAACCCAATTAAATTTGAGGGTGGCAACAGAGATCTGGAGCATTTGAGCAAGTTTATAGATGAACAT
GCCACAAAGAGGAGCAGGACCAAGGAAGAGCTTTAA

Translation (641 aa):
MKLRKAWLLVLLLALTQLLAAASAGDAHEDTSDTENATEEEEEEEEEDDDDLEVKEENGVWVLNDGNFDN
FVADKDTVLLEFYAPWCGHCKQFAPEYEKIASTLKDNDPPIAVAKIDATSASMLASKFDVSGYPTIKILK
KGQAVDYDGSRTQEEIVAKVREVSQPDWTPPPEVTLSLTKDNFDDVVNNADIILVEFYAPWCGHCKKLAP
EYEKAAKELSKRSPPIPLAKVDATEQTDLAKRFDVSGYPTLKIFRKGRPFDYNGPREKYGIVDYMIEQSG
PPSKEILTLKQVQEFLKDGDDVVIIGLFQGDGDPAYLQYQDAANNLREDYKFHHTFSPEIAKFLKVSLGK
LVLTHPEKFQSKYEPRFHVMDVQGSTEASAIKDYVVKHALPLVGHRKTSNDAKRYSKRPLVVVYYSVDFS
FDYRAATQFWRNKVLEVAKDFPEYTFAIADEEDYATEVKDLGLSESGEDVNAAILDESGKKFAMEPEEFD
SDTLREFVTAFKKGKLKPVIKSQPVPKNNKGPVKVVVGKTFDAIVMDPKKDVLIEFYAPWCGHCKQLEPI
YTSLGKKYKGQKDLVIAKMDATANDITNDQYKVEGFPTIYFAPSGDKKNPIKFEGGNRDLEHLSKFIDEH
ATKRSRTKEEL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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