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Report for CCDS20115.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20115.1 Public Mus musculus 6 Gimap3 23 108 98 CCDS HistoryNCBI Gene:83408Re-query CCDS DB by CCDS ID:20115.1Re-query CCDS DB by GeneID:83408See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20115.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000038811.9 ENSMUSP00000047435.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000038811.9Link to Ensembl Protein Viewer:ENSMUSP00000047435.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000038811Re-query CCDS DB by Protein ID:ENSMUSP00000047435
Original member Current member EBI ENSMUST00000204036.1 ENSMUSP00000145211.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000204036.1Link to Ensembl Protein Viewer:ENSMUSP00000145211.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000204036Re-query CCDS DB by Protein ID:ENSMUSP00000145211
Original member Current member NCBI NM_031247.3 NP_112537.2 Accepted alive Link to Nucleotide Sequence:NM_031247.3Link to Protein Sequence:NP_112537.2Re-query CCDS DB by Nucleotide ID:NM_031247Re-query CCDS DB by Protein ID:NP_112537Link to BLAST:NP_112537.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_112537.2 301 Q99MI6 301 100% 0 0

Chromosomal Locations for CCDS 20115.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 48765089 48765966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 48766492 48766519 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (906 nt):
ATGGAAACACTTCAGAATGTTGTAACAGGCGGAAAGAAAGGTGGCTGCACCTCAGGGTCAAGGCCACTGA
GGATCCTCCTGGTGGGCAAATCTGGCTGCGGTAAAAGCGCCACAGGGAACAGCCTCCTCCGACGACCAGC
ATTCGAGTCCAGGCTCAGAGGCCAGTCTGTGACAAGGACCAGCCAGGCAGAGACAGGCACATGGGAGGGG
AGGAGCATCCTAGTGGTAGACACACCCCCCATCTTTGAGTCAAAGGCCCAGAACCAAGACATGGACAAGG
ACATCGGAGACTGCTACCTGCTGTGTGCCCCAGGCCCCCATGTGTTGTTGCTGGTGACCCAGCTGGGACG
CTTCACAGCTGAAGATGTCATGGCTGTGAGGATGGTGAAGGAGGTCTTTGGGGTAGGGGTCATGAGGCAC
ATGATCGTCCTCTTCACCCGCAAGGAAGACCTGGCAGAGAAGTCCTTGGAAGAGTTTGTGACCCACACTG
ACAACCGCAGCCTGCGCAGCCTGGTTCAGGAGTGTGGGAGGAGGTACTGTGCCTTCAACAACAGGGCCTC
TGGGGAGGAGCAGCAAGGGCAGCTGGCAGAGCTCATGGCCCTGGTGAGGAGGCTGGAACAGGAGTGTGAA
GGCTCCTTCCACAGCAATGACCTCTTCCTTCATGCCGAGACACTCCTTAGAGAAGGTTACAGTGTGCACC
AGGAAGCCTATAGGTGCTACCTGGCCAAGGTGAGGCAGGAGGTGGAGAAACAGAGGTGGGAGCTGGAGGA
GCAGGAGGGCAGCTGGGTCCTCAAGGTCCTCCCCATAGGCAAAAAGTTGGAGGTGTTGCATTCAGATTTT
TGTTGGTATTTGGTGTTGGCCATATTAATCTTCTTCGTTTTCTTTTTTCTCTTATTTTATGTTTAA

Translation (301 aa):
METLQNVVTGGKKGGCTSGSRPLRILLVGKSGCGKSATGNSLLRRPAFESRLRGQSVTRTSQAETGTWEG
RSILVVDTPPIFESKAQNQDMDKDIGDCYLLCAPGPHVLLLVTQLGRFTAEDVMAVRMVKEVFGVGVMRH
MIVLFTRKEDLAEKSLEEFVTHTDNRSLRSLVQECGRRYCAFNNRASGEEQQGQLAELMALVRRLEQECE
GSFHSNDLFLHAETLLREGYSVHQEAYRCYLAKVRQEVEKQRWELEEQEGSWVLKVLPIGKKLEVLHSDF
CWYLVLAILIFFVFFFLLFYV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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