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Report for CCDS20139.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20139.1 Public Mus musculus 6 Hoxa2 23 108 98 CCDS HistoryNCBI Gene:15399Re-query CCDS DB by CCDS ID:20139.1Re-query CCDS DB by GeneID:15399See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20139.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000014848.10 ENSMUSP00000014848.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000014848.10Link to Ensembl Protein Viewer:ENSMUSP00000014848.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000014848Re-query CCDS DB by Protein ID:ENSMUSP00000014848
Original member NCBI NM_010451.2 NP_034581.1 Updated not alive Link to Nucleotide Sequence:NM_010451.2Link to Protein Sequence:NP_034581.1Re-query CCDS DB by Nucleotide ID:NM_010451Re-query CCDS DB by Protein ID:NP_034581
Current member NCBI NM_010451.3 NP_034581.1 Accepted alive Link to Nucleotide Sequence:NM_010451.3Link to Protein Sequence:NP_034581.1Re-query CCDS DB by Nucleotide ID:NM_010451Re-query CCDS DB by Protein ID:NP_034581Link to BLAST:NP_034581.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034581.1 372 P31245 372 100% 0 0

Chromosomal Locations for CCDS 20139.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 52162886 52163625 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 52164266 52164644 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1119 nt):
ATGAATTACGAATTTGAGCGAGAGATTGGTTTTATCAATAGCCAGCCGTCGCTCGCTGAGTGCCTGACAT
CTTTTCCCCCTGTCGCTGATACATTTCAAAGTTCATCAATCAAGACCTCGACGCTTTCACACTCGACACT
GATTCCTCCTCCTTTTGAGCAGACCATTCCCAGCCTGAACCCGGGCAGTCACCCTCGCCACGGCGCTGGC
GTTGGCGGCCGCCCCAAGTCGAGCCCCGCGGGCAGTCGCGGCAGCCCGGTGCCTGCCGGCGCCCTGCAGC
CGCCTGAGTATCCCTGGATGAAGGAGAAGAAGGCGGCCAAGAAAACCGCGCTGCCGCCCGCCGCCGCCTC
CACGGGCCCTGCCTGCCTCGGCCACAAAGAATCCCTGGAAATAGCTGATGGCAGCGGCGGGGGATCCAGG
CGTCTGAGAACCGCGTACACCAACACTCAGCTTTTGGAGCTGGAAAAGGAATTTCATTTCAACAAGTACC
TTTGCAGACCCCGCAGGGTGGAAATCGCCGCGCTGCTGGATTTGACCGAGAGACAAGTGAAAGTGTGGTT
TCAGAACCGGAGAATGAAGCATAAGAGGCAAACCCAGTGCAAGGAGAACCAAAACAGCGAAGGGAAATTT
AAAAACCTGGAGGACTCGGACAAAGTGGAGGAAGACGAGGAAGAGAAGTCACTCTTTGAGCAAGCCCTCA
GTGTCTCCGGGGCCCTTCTGGAGAGGGAAGGGTACACTTTTCAGCAAAATGCGCTCTCTCAACAGCAGGC
TCCCAATGGACACAATGGCGACTCCCAAACTTTCCCAGTTTCGCCTTTAACCAGCAATGAGAAAAATTTG
AAACATTTTCAGCACCAGTCACCCACTGTTCCTAACTGCTTGTCAACAATGGGCCAGAACTGTGGAGCTG
GCCTAAACAATGACAGTCCCGAGGCCATCGAGGTCCCCTCTTTGCAGGACTTCAATGTTTTCTCCACAGA
TTCCTGCCTGCAGCTTTCAGATGCACTGTCGCCCAGCTTGCCTGGCTCCCTGGACAGTCCTGTAGATATC
TCAGCTGACAGCTTTGACTTTTTTACAGACACACTCACCACAATCGACCTACAGCATCTGAATTACTAA

Translation (372 aa):
MNYEFEREIGFINSQPSLAECLTSFPPVADTFQSSSIKTSTLSHSTLIPPPFEQTIPSLNPGSHPRHGAG
VGGRPKSSPAGSRGSPVPAGALQPPEYPWMKEKKAAKKTALPPAAASTGPACLGHKESLEIADGSGGGSR
RLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKHKRQTQCKENQNSEGKF
KNLEDSDKVEEDEEEKSLFEQALSVSGALLEREGYTFQQNALSQQQAPNGHNGDSQTFPVSPLTSNEKNL
KHFQHQSPTVPNCLSTMGQNCGAGLNNDSPEAIEVPSLQDFNVFSTDSCLQLSDALSPSLPGSLDSPVDI
SADSFDFFTDTLTTIDLQHLNY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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