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Report for CCDS20143.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20143.1 Public Mus musculus 6 Hoxa5 23 108 98 CCDS HistoryNCBI Gene:15402Re-query CCDS DB by CCDS ID:20143.1Re-query CCDS DB by GeneID:15402See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20143.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000048794.6 ENSMUSP00000039012.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000048794.6Link to Ensembl Protein Viewer:ENSMUSP00000039012.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000048794Re-query CCDS DB by Protein ID:ENSMUSP00000039012
Original member NCBI NM_010453.5 NP_034583.1 Updated not alive Link to Nucleotide Sequence:NM_010453.5Link to Protein Sequence:NP_034583.1Re-query CCDS DB by Nucleotide ID:NM_010453Re-query CCDS DB by Protein ID:NP_034583
Current member NCBI NM_010453.6 NP_034583.1 Accepted alive Link to Nucleotide Sequence:NM_010453.6Link to Protein Sequence:NP_034583.1Re-query CCDS DB by Nucleotide ID:NM_010453Re-query CCDS DB by Protein ID:NP_034583Link to BLAST:NP_034583.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034583.1 270 P09021 270 100% 0 0

Chromosomal Locations for CCDS 20143.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 52202581 52202831 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 52203789 52204350 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (813 nt):
ATGAGCTCTTATTTTGTAAACTCATTTTGCGGTCGCTATCCAAATGGCCCGGACTACCAGTTGCATAATT
ATGGAGATCATAGTTCCGTGAGCGAACAATTCAGGGACTCGGCGAGCATGCACTCCGGCAGGTACGGCTA
CGGCTACAATGGCATGGATCTCAGCGTCGGCCGTTCGGGTTCCGGCCACTTTGGCTCCGGCGAGCGCGCC
CGCAGCTACGCGGCTGGGGCCAGTGCGGCGCCCGCCGAGCCCAGGTACAGCCAGCCGGCCACGTCCACGC
ACTCGCCACCGCCCGACCCGCTGCCCTGCTCAGCGGTGGCCCCCTCGCCCGGCAGCGACAGCCACCACGG
CGGGAAAAACTCCCTGGGCAACTCCAGCGGCGCCTCGGCCAACGCCGGCAGCACCCACATCAGCAGCAGA
GAGGGGGTTGGCACGGCGTCCGCAGCCGAGGAGGACGCCCCTGCCAGCAGCGAGCAGGCGGGCGCCCAGA
GCGAGCCGAGCCCGGCGCCGCCCGCTCAGCCCCAGATCTACCCCTGGATGCGCAAGCTGCACATTAGTCA
CGACAATATAGGTGGCCCAGAAGGCAAAAGGGCCCGGACGGCCTACACTCGCTACCAGACCCTGGAGCTG
GAGAAAGAATTCCACTTCAACCGCTACCTGACCCGCCGAAGAAGGATCGAAATAGCTCATGCCCTTTGCC
TCTCCGAGAGACAAATTAAAATCTGGTTCCAAAACAGGAGGATGAAGTGGAAAAAAGATAATAAGCTGAA
AAGCATGAGTATGGCCGCGGCAGGGGGGGCTTTCCGCCCCTGA

Translation (270 aa):
MSSYFVNSFCGRYPNGPDYQLHNYGDHSSVSEQFRDSASMHSGRYGYGYNGMDLSVGRSGSGHFGSGERA
RSYAAGASAAPAEPRYSQPATSTHSPPPDPLPCSAVAPSPGSDSHHGGKNSLGNSSGASANAGSTHISSR
EGVGTASAAEEDAPASSEQAGAQSEPSPAPPAQPQIYPWMRKLHISHDNIGGPEGKRARTAYTRYQTLEL
EKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKKDNKLKSMSMAAAGGAFRP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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