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Report for CCDS20154.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20154.1 Public Mus musculus 6 Chn2 23 108 98 CCDS HistoryNCBI Gene:69993Re-query CCDS DB by CCDS ID:20154.1Re-query CCDS DB by GeneID:69993See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20154.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000067741.9 ENSMUSP00000066078.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000067741.9Link to Ensembl Protein Viewer:ENSMUSP00000066078.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000067741Re-query CCDS DB by Protein ID:ENSMUSP00000066078
Original member Current member NCBI NM_023543.2 NP_076032.2 Accepted alive Link to Nucleotide Sequence:NM_023543.2Link to Protein Sequence:NP_076032.2Re-query CCDS DB by Nucleotide ID:NM_023543Re-query CCDS DB by Protein ID:NP_076032Link to BLAST:NP_076032.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_076032.2 332 Q80XD1-1 332 100% 0 0

Chromosomal Locations for CCDS 20154.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 54272908 54273153 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 54286094 54286178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 54290267 54290440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 54293038 54293115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 54295784 54295921 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 54298045 54298150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 54300073 54300244 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (999 nt):
ATGTGCTCTCAGGAACTGTGGCTGGAAAATGAGAGAAAATGTGCTATGGTTCGGAAGTCCAAGCCCAGCA
GGAAGCGCCAAGAGCTGCTGGCCATTGCATTTGGGGTCAAGGTGGGGCTCAAAGGTGGCTTTCTCTGGTC
TCCTCTCAAGCTCTTTGCCTGTTCACAGATCTCTTCACTGGTCCGAAGAGCTGCCCTCACACACAACGAC
AACCACTTCAACTATGAGAAGACACACAACTTCAAGGTGCACACATTCCGGGGCCCACACTGGTGTGAAT
ACTGTGCCAATTTTATGTGGGGGCTCATCGCCCAGGGAGTCCGGTGTTCAGATTGTGGGTTAAACGTACA
CAAACAGTGCTCCAAGCACGTCCCCAATGACTGCCAGCCAGATCTCAAGAGGATCAAGAAAGTGTACTGC
TGTGACCTCACCACGCTTGTCAAAGCTCACAACACTCAGAGACCCATGGTGGTGGACATATGTATTCGGG
AAATTGAAGCAAGAGGATTAAAGTCAGAAGGGCTTTACAGAGTCTCTGGATTCACAGAACACATTGAAGA
TGTCAAGATGGCGTTTGACAGAGATGGTGAAAAGGCGGATATCTCTGCCAACATCTACCCAGACATAAAC
ATCATCACTGGAGCCCTGAAACTGTACTTCCGAGACTTACCCATCCCTATCATCACATATGACACCTACT
CCAAATTTATAGAGGCAGCAAAAATCTCCAATGCGGATGAGAGGCTGGAAGCTGTCCATGAGGTCCTGAT
GCTGCTGCCTCCTGCCCACTATGAGACCCTGCGCTACCTGATGATCCACCTGAAAAAGGTTACCATGAAT
GAAAAGGACAATTTAATGAATGCCGAAAATCTGGGGATCGTGTTTGGGCCCACCCTGATGAGACCCCCTG
AGGACAGCACCCTCACCACCCTCCATGACATGCGGTACCAAAAGCTGATCGTGCAGATTTTAATAGAAAA
CGAAGATGTTCTGTTTTAA

Translation (332 aa):
MCSQELWLENERKCAMVRKSKPSRKRQELLAIAFGVKVGLKGGFLWSPLKLFACSQISSLVRRAALTHND
NHFNYEKTHNFKVHTFRGPHWCEYCANFMWGLIAQGVRCSDCGLNVHKQCSKHVPNDCQPDLKRIKKVYC
CDLTTLVKAHNTQRPMVVDICIREIEARGLKSEGLYRVSGFTEHIEDVKMAFDRDGEKADISANIYPDIN
IITGALKLYFRDLPIPIITYDTYSKFIEAAKISNADERLEAVHEVLMLLPPAHYETLRYLMIHLKKVTMN
EKDNLMNAENLGIVFGPTLMRPPEDSTLTTLHDMRYQKLIVQILIENEDVLF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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