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Report for CCDS20210.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20210.1 Public Mus musculus 6 Mad2l1 23 108 98 CCDS HistoryNCBI Gene:56150Re-query CCDS DB by CCDS ID:20210.1Re-query CCDS DB by GeneID:56150See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20210.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000101343.1 ENSMUSP00000098897.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000101343.1Link to Ensembl Protein Viewer:ENSMUSP00000098897.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000101343Re-query CCDS DB by Protein ID:ENSMUSP00000098897
Original member Current member EBI ENSMUST00000116605.7 ENSMUSP00000112304.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000116605.7Link to Ensembl Protein Viewer:ENSMUSP00000112304.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000116605Re-query CCDS DB by Protein ID:ENSMUSP00000112304
Original member Current member NCBI NM_001355624.1 NP_001342553.1 Accepted alive Link to Nucleotide Sequence:NM_001355624.1Link to Protein Sequence:NP_001342553.1Re-query CCDS DB by Nucleotide ID:NM_001355624Re-query CCDS DB by Protein ID:NP_001342553Link to BLAST:NP_001342553.1
Original member Current member NCBI NM_019499.5 NP_062372.2 Accepted alive Link to Nucleotide Sequence:NM_019499.5Link to Protein Sequence:NP_062372.2Re-query CCDS DB by Nucleotide ID:NM_019499Re-query CCDS DB by Protein ID:NP_062372Link to BLAST:NP_062372.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001342553.1 205 Q9Z1B5 205 100% 0 0
NP_062372.2 205 Q9Z1B5 205 100% 0 0

Chromosomal Locations for CCDS 20210.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 66535527 66535599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 66535958 66536104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 66537569 66537689 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 66538965 66539068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 66539771 66539943 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (618 nt):
ATGGCACAGCAGCTCGCCCGAGAGCAAGGCATCACCCTGCGTGGGAGCGCAGAAATCGTGGCCGAGTTTT
TCTCATTTGGCATCAACAGCATTTTGTATCAGCGTGGCATTTATCCGTCGGAAACCTTTACTAGAGTGCA
GAAATATGGACTCACCTTGCTTACAACTACTGACCCCGAGCTCATAAAGTATCTCAATAATGTGGTGGAA
CAGCTAAAAGAGTGGCTGTACAAGTGCTCAGTTCAGAAACTGGTGGTGGTCATCTCAAATATTGAAAGTG
GTGAAGTCCTTGAAAGATGGCAGTTTGATATTGAGTGTGACAAAACTGCAAAAGAGGAAGGTGTTCGTAG
AGAAAAGTCCCAGAAAGCCATACAGGATGAAATTCGCTCAGTGATTAGACAGATTACAGCTACTGTGACA
TTTCTGCCACTGTTGGAAGTTTCTTGTTCCTTTGATCTGCTGATTTACACTGACAAAGACTTGGTGGTAC
CTGAAAAGTGGGAAGAATCGGGACCGCAATTTATTACCAATTGTGAAGAAGTCCGTCTACGCTCATTTAC
AACCACAATCCATAAAGTGAATAGTATGGTGGCCTACAAAACCCCTGTCAATGACTGA

Translation (205 aa):
MAQQLAREQGITLRGSAEIVAEFFSFGINSILYQRGIYPSETFTRVQKYGLTLLTTTDPELIKYLNNVVE
QLKEWLYKCSVQKLVVVISNIESGEVLERWQFDIECDKTAKEEGVRREKSQKAIQDEIRSVIRQITATVT
FLPLLEVSCSFDLLIYTDKDLVVPEKWEESGPQFITNCEEVRLRSFTTTIHKVNSMVAYKTPVND


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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