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Report for CCDS20224.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20224.1 Public Mus musculus 6 Spmip9 23 108 98 CCDS HistoryNCBI Gene:74221Re-query CCDS DB by CCDS ID:20224.1Re-query CCDS DB by GeneID:74221See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20224.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000063456.4 ENSMUSP00000066786.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000063456.4Link to Ensembl Protein Viewer:ENSMUSP00000066786.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000063456Re-query CCDS DB by Protein ID:ENSMUSP00000066786
Original member Current member NCBI NM_028825.3 NP_083101.1 Accepted alive Link to Nucleotide Sequence:NM_028825.3Link to Protein Sequence:NP_083101.1Re-query CCDS DB by Nucleotide ID:NM_028825Re-query CCDS DB by Protein ID:NP_083101Link to BLAST:NP_083101.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083101.1 180 Q9DAG4-1 180 100% 0 0

Chromosomal Locations for CCDS 20224.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 70913264 70913686 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 70915642 70915734 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 70917666 70917692 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (543 nt):
ATGGCACGTGTGGTGAGACCCCAAAAGAACCACGTGGACCTAGATATATACCAAAGCTCATACATGGTGG
ACTATAAGCCCTTTGGGAAGTACAAATATTCTAGAGTCACGCCACAAGAGCAGGCCAAGCTTGACGCTCA
GCTCCAGAGCAAAGAGTTTTACCAGCCCAAGCCCAACCCCAACCCCAAGCTGGAGGAAGGCTATCCTGCT
TTCAGAAGACCCTACATGACTGCCCTAGACTTGGGAGTCCCTGGCTTCTTCCCGCCACAAGAACGGGTAA
CTACTAGGAAGGATGACGGCAGGTTTACCACCACCTGCCATTATGCTTACCCAGCATCCCTGGCGCTGTA
CCTGGCCCAGCAAGACCCCTACTGGCTTCACCAGAGGGCCGACTTCCCATGCCTCATGGAACCGGAGCGG
CAGCCTGCTCCAGAAGTGGGCAAAGGCTACCTTCTACTCCCTGGCTGTCTCTGTGACCATCACCAGAGAG
TCAAGGTCCCCATCTTGAATAGGTGGGGCCCCTTGATGCCATTTTACCAGTAG

Translation (180 aa):
MARVVRPQKNHVDLDIYQSSYMVDYKPFGKYKYSRVTPQEQAKLDAQLQSKEFYQPKPNPNPKLEEGYPA
FRRPYMTALDLGVPGFFPPQERVTTRKDDGRFTTTCHYAYPASLALYLAQQDPYWLHQRADFPCLMEPER
QPAPEVGKGYLLLPGCLCDHHQRVKVPILNRWGPLMPFYQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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