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Report for CCDS20253.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20253.1 Public Mus musculus 6 Reg3b 23 108 98 CCDS HistoryNCBI Gene:18489Re-query CCDS DB by CCDS ID:20253.1Re-query CCDS DB by GeneID:18489See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20253.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000096904.5 ENSMUSP00000094667.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000096904.5Link to Ensembl Protein Viewer:ENSMUSP00000094667.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000096904Re-query CCDS DB by Protein ID:ENSMUSP00000094667
Original member Current member NCBI NM_011036.1 NP_035166.1 Accepted alive Link to Nucleotide Sequence:NM_011036.1Link to Protein Sequence:NP_035166.1Re-query CCDS DB by Nucleotide ID:NM_011036Re-query CCDS DB by Protein ID:NP_035166Link to BLAST:NP_035166.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035166.1 175 P35230 175 100% 0 0

Chromosomal Locations for CCDS 20253.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 78371205 78371280 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 78371799 78371917 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 78372088 78372225 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 78372812 78372938 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 78373199 78373266 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (528 nt):
ATGCTGCCTCCAACAGCCTGCTCCGTCATGTCCTGGATGCTGCTCTCCTGCCTGATGCTCTTATCTCAGG
TTCAAGGTGAAGACTCCCTGAAGAATATACCCTCCGCACGCATTAGTTGCCCCAAGGGCTCCCAGGCTTA
TGGCTCCTACTGCTATGCCTTGTTTCAGATACCACAGACCTGGTTTGATGCAGAACTGGCCTGCCAAAAG
AGGCCTGGAGGACACCTCGTATCTGTGCTCAATAGCGCTGAGGCTTCATTCTTGTCCTCCATGGTGAAGA
GAACAGGAAACAGCTACCAATACACTTGGATTGGGCTCCATGACCCCACTCTGGGTGCAGAACCCAATGG
AGGTGGATGGGAATGGAGTAACAATGACGTGATGAATTACTTTAACTGGGAGAGGAACCCATCTACTGCC
TTAGACCGTGCTTTCTGTGGCAGCTTGTCAAGAGCTTCTGGATTTCTAAAATGGAGAGATATGACATGTG
AGGTGAAGTTGCCCTATGTCTGCAAATTTACTGGTTAA

Translation (175 aa):
MLPPTACSVMSWMLLSCLMLLSQVQGEDSLKNIPSARISCPKGSQAYGSYCYALFQIPQTWFDAELACQK
RPGGHLVSVLNSAEASFLSSMVKRTGNSYQYTWIGLHDPTLGAEPNGGGWEWSNNDVMNYFNWERNPSTA
LDRAFCGSLSRASGFLKWRDMTCEVKLPYVCKFTG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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