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Report for CCDS20299.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20299.1 Public Mus musculus 6 Nat8f3 23 108 98 CCDS HistoryNCBI Gene:93674Re-query CCDS DB by CCDS ID:20299.1Re-query CCDS DB by GeneID:93674See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20299.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000050780.7 ENSMUSP00000093431.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000050780.7Link to Ensembl Protein Viewer:ENSMUSP00000093431.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000050780Re-query CCDS DB by Protein ID:ENSMUSP00000093431
Original member Current member EBI ENSMUST00000168531.1 ENSMUSP00000131413.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000168531.1Link to Ensembl Protein Viewer:ENSMUSP00000131413.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000168531Re-query CCDS DB by Protein ID:ENSMUSP00000131413
Original member Current member NCBI NM_001037842.3 NP_001032931.1 Accepted alive Link to Nucleotide Sequence:NM_001037842.3Link to Protein Sequence:NP_001032931.1Re-query CCDS DB by Nucleotide ID:NM_001037842Re-query CCDS DB by Protein ID:NP_001032931Link to BLAST:NP_001032931.1

Chromosomal Locations for CCDS 20299.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 85761095 85761778 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (684 nt):
ATGGCTCCTTATCATATCCGAAAATACCAGGGCAGCGACCACAGGAGTGTGGTGGATTTGTTCCGCAGAG
GCATGGAGGAGCACATCCCCGCCACCTTTCGCCACATGCTGCTGCTGCCCCGAACCCTCCTGCTCTTACT
CGGGGTCCCTCTTACTCTATTCCTGGCCTCAGGCTCCTGGCTTCTGGTTCTTCTGTCCATCCTTACCCTC
TTTCTTTCCCTGTGGTTCCTTGCAAAATACACATGGGAAAAGCATGTGATGAACTGTTTGCACACAGACA
TGGCTGACATCACCAGAACCTACCTGAGTTCTCACTCCTCCTGCTTCTGGGTAGCTGAGTCTAGAGGTCA
GACAGTGGGCATGGTGGCTGCTCGGCCAGTGAAGGACCCCCTCCTGCAGAAGAAGCAACTGCAGCTACTT
CACCTCTCTGTGTCATTGCAGCACCGAAGAGAAGGCCTAGGGAAAGCTATGGTCAGGACTGTCCTCCAAT
TTGCACAGATGCAGGGCTTCAGTGAAGTTGTCCTTTCCACCAGCATGCTGCAGTACGCAGCCCTGGCTCT
CTACCAGGGCATGGGCTTCCAGAAGACTGGCGAGACCTTCTACACCTATTTGTCCAGACTAAGGAAATCT
CCAATGATAAACTTAAAGTATAGCCTCACTTCTCCTTGGGAAGGGGACCTGTGA

Translation (227 aa):
MAPYHIRKYQGSDHRSVVDLFRRGMEEHIPATFRHMLLLPRTLLLLLGVPLTLFLASGSWLLVLLSILTL
FLSLWFLAKYTWEKHVMNCLHTDMADITRTYLSSHSSCFWVAESRGQTVGMVAARPVKDPLLQKKQLQLL
HLSVSLQHRREGLGKAMVRTVLQFAQMQGFSEVVLSTSMLQYAALALYQGMGFQKTGETFYTYLSRLRKS
PMINLKYSLTSPWEGDL


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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