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Report for CCDS20368.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20368.1 Public Mus musculus 6 Tmem43 23 108 98 CCDS HistoryNCBI Gene:74122Re-query CCDS DB by CCDS ID:20368.1Re-query CCDS DB by GeneID:74122See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20368.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000032183.5 ENSMUSP00000032183.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000032183.5Link to Ensembl Protein Viewer:ENSMUSP00000032183.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000032183Re-query CCDS DB by Protein ID:ENSMUSP00000032183
Original member Current member NCBI NM_028766.3 NP_083042.1 Accepted alive Link to Nucleotide Sequence:NM_028766.3Link to Protein Sequence:NP_083042.1Re-query CCDS DB by Nucleotide ID:NM_028766Re-query CCDS DB by Protein ID:NP_083042Link to BLAST:NP_083042.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083042.1 400 Q9DBS1 400 100% 0 0

Chromosomal Locations for CCDS 20368.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 91473887 91473898 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 91477245 91477394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 91478206 91478340 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 91478706 91478800 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 91479573 91479622 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 91479881 91479950 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 91480650 91480720 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 91481932 91482053 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 91482254 91482328 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 91482661 91482762 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 91485317 91485434 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 91486745 91486947 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1203 nt):
ATGGCAGCGAACTATTCCAGTACCAGCAGCAGGAAAGAACATGTCAAAGTGACTTCTGAGCCCCAGCCAG
GCTTCCTGGAGCGGCTGAGTGAGACTTCGGGCGGGATGTTCGTGGGGCTAATGACCTTCTTACTCTCCTT
CTACTTAATTTTCACCAACGAGGGCCGAGCACTGAAGACAGCCACATCGCTTGCAGAGGGGCTGTCACTC
GTGGTGTCCCCTGACAGCATCCATAGTGTAGCTCCGGAGAATGAAGGAAGACTGGTACACATAATCGGGG
CCCTGCGGACTTCCAAGCTCTTGTCTGACCCAAATTATGGGGTCCATCTACCAGCTGTGAAACTGCGACG
GCATGTGGAGATGTACCAGTGGGTGGAGACAGAAGAGTCCAGTGAGTACACGGAGGACGGACAGGTGAAG
AAGGAGACAAAGTACTCCTACAACACAGAGTGGAGGTCAGAAATTGTCAACAGCAGAAACTTTGACCGAG
AGATTGGCCACAAAAACCCCAGTGCCATGGCAGTGGAGTCTTTCACAGCGACCGCCCCCTTTGTCCAGAT
TGGCAGGTTTTTTCTCTCAGCAGGCCTCATTGACAAGATTGACAACTTCAAGGCCCTGAGCCTGGCCAAG
CTGGAGGACCCCCATGTGGACATCATTCGCCGCGGAGACTTTTTCTACCACAGTGAAAACCCTAAATACC
CGGAGGTTGGTGATGTGCGAGTCTCCTTTTCTTATGCGGGACTGAGCAGCGATGACCCTGACCTGGGCCC
GGCTCACGTGGTTACTGTGATTGCCCGGCAACGAGGTGACCAACTAATCCCATATTCCACCAAGTCCGGG
GACACCTTGTTGCTCCTGCACCATGGGGACTTCTCAGCTGAGGAGGTGTTTCGTAGAGAACAGAAGAGCA
ATTCCATGAAGACATGGGGCCTGCGGGCGGCTGGATGGATGGCCATGTTTATGGGCCTCAACCTCATGAC
ACGGATCCTCTACACCCTAGTGGACTGGTTTCCTGTCTTCCGAGACCTTGTCAACATTGGCCTGAAAGCC
TTTGCCTTCTGTGTGGCCACTTCCCTGACCCTGTTGACTGTGGCTGCTGGCTGGCTCTTCTACCGACCGC
TGTGGGCTGCTCTAATCGGCTGCCTGGCTCTGGTGCCCATTATCATTGCACGGACCCGGGTGCCAGCCAA
AAAGCTGGAGTGA

Translation (400 aa):
MAANYSSTSSRKEHVKVTSEPQPGFLERLSETSGGMFVGLMTFLLSFYLIFTNEGRALKTATSLAEGLSL
VVSPDSIHSVAPENEGRLVHIIGALRTSKLLSDPNYGVHLPAVKLRRHVEMYQWVETEESSEYTEDGQVK
KETKYSYNTEWRSEIVNSRNFDREIGHKNPSAMAVESFTATAPFVQIGRFFLSAGLIDKIDNFKALSLAK
LEDPHVDIIRRGDFFYHSENPKYPEVGDVRVSFSYAGLSSDDPDLGPAHVVTVIARQRGDQLIPYSTKSG
DTLLLLHHGDFSAEEVFRREQKSNSMKTWGLRAAGWMAMFMGLNLMTRILYTLVDWFPVFRDLVNIGLKA
FAFCVATSLTLLTVAAGWLFYRPLWAALIGCLALVPIIIARTRVPAKKLE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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