NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS20402.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20402.1 Public Mus musculus 6 Edem1 23 108 98 CCDS HistoryNCBI Gene:192193Re-query CCDS DB by CCDS ID:20402.1Re-query CCDS DB by GeneID:192193See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20402.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000089162.4 ENSMUSP00000086565.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000089162.4Link to Ensembl Protein Viewer:ENSMUSP00000086565.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000089162Re-query CCDS DB by Protein ID:ENSMUSP00000086565
Original member Current member NCBI NM_138677.2 NP_619618.1 Accepted alive Link to Nucleotide Sequence:NM_138677.2Link to Protein Sequence:NP_619618.1Re-query CCDS DB by Nucleotide ID:NM_138677Re-query CCDS DB by Protein ID:NP_619618Link to BLAST:NP_619618.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_619618.1 652 Q925U4 652 100% 0 0

Chromosomal Locations for CCDS 20402.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 108828740 108829233 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 108836740 108836812 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 108841600 108841703 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 108842927 108843098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 108844827 108845010 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 108846672 108846846 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 108848710 108848830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 108849395 108849565 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 108851210 108851283 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 108852490 108852586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 108854245 108854448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 108855467 108855556 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1959 nt):
ATGCAATGGCGAGCGCTTGTCCTGGGGCTGGTGCTGCTGCGCCTCGGCCTCCACGCGGTGCTCTGGTTGG
TCTTCGGGCTGGGGCCCAGCATGGGCTTCTACCAGCGGTTTCCGCTCAGCTTCGGCTTCCAGCGCTTGAG
GGACCCCGACGGCTCGGGGCCAGTTGGTCCGCCCGGAGGCCCGGCCTGGCTTCATCGGCCAAGGCGCGGA
ACGGAGGGGCGGCTTGAGACCCCGCCAGAGCCGGGACCGACGCCGGGACCGGGCGTGTGCGGCCCGGCGC
ACTGGGGCTATGCCCTGGGCGGCGGTGGCTGCGGCCCGGACGAGTACGAGCGGCGCTACAGCGGCGCCTT
CCCGCCGCAGCTGCGTGCCCAGATGCGCGACCTGGCGCGGGGCATGTTCGTCTTCGGCTATGACAACTAC
ATGGCGCACGCCTTTCCGCAGGACGAGCTCAACCCCATCTACTGCCGCGGCCGGGGGCCTGACCGCGGAG
ACCCTTCCAATCTGAACATCAATGATGTCCTAGGGAATTACTCTCTGACTCTGGTTGATGCCTTGGATAC
ATTGGCAATAATGGGAAATTCATCCGAGTTCCAGAAGGCAGTCAAGTTAGTGATCAACACTGTTTCATTT
GACAAAGATTCCACAGTCCAGGTCTTCGAAGCTACGATAAGGGTTCTGGGAAGCCTCCTTTCTGCTCACA
GAATAATAACTGATTCCAAACAGCCCTTTGGTGACATGACAATTGAGGATTATGATAATGAATTGTTGTA
CATGGCCCATGACTTGGCTGTGCGGCTCCTTCCAGCCTTTGAAAACACCAAGACAGGGATCCCCTATCCT
CGGGTGAATCTGAAGACAGGTGTTCCTCCTGACAGCAATAATGAGACCTGCACAGCGGGGGCCGGTTCTC
TCCTGGTGGAATTTGGGATTCTGAGCCGACTGCTGGGGGATTCCACTTTTGAGTGGGTTGCCAGACGAGC
TGTGAAAGCCCTCTGGAACTTGCGGAGCAACGATACAGGATTATTAGGCAATGTTGTGAACATCCAGACA
GGCCATTGGGTTGGAAAGCAGAGTGGCTTGGGTGCTGGGCTGGATTCCTTCTATGAGTACCTCTTGAAAT
CTTACATTCTTTTTGGAGAAAAAGAAGATCTAGAGATGTTTAATGCTGCGTATCAGAGCATCCAGAGCTA
CCTGCGAAGAGGCCGGGAAGCCTGCAATGAAGGAGAAGGAGACCCACCGCTCTACGTCAACGTGAACATG
TTCAGTGGGCAGCTCATGAACACCTGGATTGACTCGCTGCAGGCTTTCTTCCCTGGACTGCAGGTTCTGA
TAGGGGATGTGGAAGATGCCATCTGCCTACACGCCTTCTACTATGCCATATGGAAGCGGTACGGGGCCCT
CCCTGAGCGCTATAACTGGCAACTCCAGGCCCCTGATGTTCTCTTCTACCCTCTGAGACCAGAGCTAGTG
GAGTCCACATATCTCCTCTACCAGGCAACCAAGAATCCCTTCTACCTCCATGTAGGAATGGACATTCTGC
AGAGTCTTGAAAAATACACAAAAGTCAAATGTGGATATGCTACGCTGCATCACGTCATAGACAAGTCTAA
AGAAGACCGGATGGAAAGCTTCTTTCTCAGCGAGACTTGCAAATACTTGTATCTGCTATTTGATGAAGAG
AATCCAGTACACAAATCTGGAACCAGATACATGTTTACAACTGAGGGCCATATCATATCTGTGGACAAAC
GTCTTCGGGAATTGCCTTGGAAGGAATTCTTCTCTGAAGATGGGGAGCGGGACCAAGAGGAAAAGTTTGT
ACACAGACCTAAGTCTCAGGAGCTCAGAGTCATTAACTCCAGTTCTAATTGTAATCGTGTTCCTGATGAG
AGGAGATACTCCTTGCCCTTAAAGAGCATCTACATGCGCCAGATCGACCAGATGGTTGGCTTGATTTGA

Translation (652 aa):
MQWRALVLGLVLLRLGLHAVLWLVFGLGPSMGFYQRFPLSFGFQRLRDPDGSGPVGPPGGPAWLHRPRRG
TEGRLETPPEPGPTPGPGVCGPAHWGYALGGGGCGPDEYERRYSGAFPPQLRAQMRDLARGMFVFGYDNY
MAHAFPQDELNPIYCRGRGPDRGDPSNLNINDVLGNYSLTLVDALDTLAIMGNSSEFQKAVKLVINTVSF
DKDSTVQVFEATIRVLGSLLSAHRIITDSKQPFGDMTIEDYDNELLYMAHDLAVRLLPAFENTKTGIPYP
RVNLKTGVPPDSNNETCTAGAGSLLVEFGILSRLLGDSTFEWVARRAVKALWNLRSNDTGLLGNVVNIQT
GHWVGKQSGLGAGLDSFYEYLLKSYILFGEKEDLEMFNAAYQSIQSYLRRGREACNEGEGDPPLYVNVNM
FSGQLMNTWIDSLQAFFPGLQVLIGDVEDAICLHAFYYAIWKRYGALPERYNWQLQAPDVLFYPLRPELV
ESTYLLYQATKNPFYLHVGMDILQSLEKYTKVKCGYATLHHVIDKSKEDRMESFFLSETCKYLYLLFDEE
NPVHKSGTRYMFTTEGHIISVDKRLRELPWKEFFSEDGERDQEEKFVHRPKSQELRVINSSSNCNRVPDE
RRYSLPLKSIYMRQIDQMVGLI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH