NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS2041.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2041.1 Public Homo sapiens 2 MRPL30 24 110 108 CCDS HistoryNCBI Gene:51263Re-query CCDS DB by CCDS ID:2041.1Re-query CCDS DB by GeneID:51263See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2041.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000338148.8 ENSP00000338057.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000338148.8Link to Ensembl Protein Viewer:ENSP00000338057.3Re-query CCDS DB by Nucleotide ID:ENST00000338148Re-query CCDS DB by Protein ID:ENSP00000338057
Original member Current member EBI ENST00000409841.1 ENSP00000386752.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000409841.1Link to Ensembl Protein Viewer:ENSP00000386752.1Re-query CCDS DB by Nucleotide ID:ENST00000409841Re-query CCDS DB by Protein ID:ENSP00000386752
Original member Current member NCBI NM_145212.4 NP_660213.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_145212.4Link to Protein Sequence:NP_660213.1Re-query CCDS DB by Nucleotide ID:NM_145212Re-query CCDS DB by Protein ID:NP_660213Link to BLAST:NP_660213.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_660213.1 161 Q8TCC3-1 161 100% 0 0

Chromosomal Locations for CCDS 2041.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 99186204 99186254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 99188177 99188257 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 99194751 99194897 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 99195116 99195189 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 99195573 99195705 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (486 nt):
ATGGCTGGGATTTTGCGCTTAGTAGTTCAATGGCCCCCAGGCAGACTACAGACTGTGACAAAAGGTGTGG
AGTCTCTTATTTGTACAGATTGGATTCGTCACAAATTCACCAGATCAAGAATTCCAGAAAAAGTGTTTCA
GGCCTCACCTGAAGATCATGAAAAATACGGTGGGGATCCACAGAACCCTCATAAACTGCATATTGTTACC
AGAATAAAAAGTACAAGAAGACGTCCATATTGGGAAAAAGATATAATAAAGATGCTTGGATTAGAAAAAG
CACATACCCCTCAAGTTCACAAGAATATCCCTTCAGTGAATGCAAAATTGAAAGTAGTTAAGCATTTGAT
AAGAATCAAGCCCTTGAAGTTGCCACAAGGACTTCCAGCAGAGGAGAACATGTCTAACACGTGCCTCAAA
AGCACTGGGGAGTTAGTAGTGCAGTGGCATCTGAAACCTGTGGAGCAGAAAGCACATGAGTCCTAA

Translation (161 aa):
MAGILRLVVQWPPGRLQTVTKGVESLICTDWIRHKFTRSRIPEKVFQASPEDHEKYGGDPQNPHKLHIVT
RIKSTRRRPYWEKDIIKMLGLEKAHTPQVHKNIPSVNAKLKVVKHLIRIKPLKLPQGLPAEENMSNTCLK
STGELVVQWHLKPVEQKAHES


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH