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Report for CCDS20436.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20436.1 Public Mus musculus 6 Vgll4 23 108 98 CCDS HistoryNCBI Gene:232334Re-query CCDS DB by CCDS ID:20436.1Re-query CCDS DB by GeneID:232334See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20436.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000032459.13 ENSMUSP00000032459.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000032459.13Link to Ensembl Protein Viewer:ENSMUSP00000032459.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000032459Re-query CCDS DB by Protein ID:ENSMUSP00000032459
Original member NCBI NM_177683.3 NP_808351.1 Updated not alive Link to Nucleotide Sequence:NM_177683.3Link to Protein Sequence:NP_808351.1Re-query CCDS DB by Nucleotide ID:NM_177683Re-query CCDS DB by Protein ID:NP_808351
Current member NCBI NM_177683.4 NP_808351.1 Accepted alive Link to Nucleotide Sequence:NM_177683.4Link to Protein Sequence:NP_808351.1Re-query CCDS DB by Nucleotide ID:NM_177683Re-query CCDS DB by Protein ID:NP_808351Link to BLAST:NP_808351.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_808351.1 287 Q80V24 287 100% 0 0

Chromosomal Locations for CCDS 20436.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 114862165 114862436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 114862756 114862879 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 114863884 114864079 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 114890617 114890806 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 114921317 114921398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (864 nt):
ATGCTGTTTATGAAGATGGACCTGTTGAACTACCAATACTTGGACAAGATGAACAACAATATCGGCGTTC
TGTGCTATGAAGGTGAAGCTTCCCTCAGGGGAGAACCCAGGATGCAGACCCTCCCGGTGGCCTCTGCGCT
CAGCAGTCACCGCACAGGCCCGCCTCCCATCAGCCCCAGCAAGAGGAAATTCAGCATGGAGCCCGGGGAC
AAGGACTTGGACTGTGAAAACGACCACGTCTCCAAGATGAGCCGCATCTTCAGCCCCCATTTGAATAAGA
CTGTCAACGGAGACTGCCGCAGAGATCCCCGGGAGCGGAGCCGCAGTCCCATTGAACGGGCTGCAGCCCC
CGCCGTGAGCTTGCATGGTGGCCACCTGTACGCATCTCTCCCCAGCCTCATGGAGCAGCCTCTTGCCCTG
ACTAAGAACAGCAGTGACACAGGCAGGTCAGCTGTGGAGCGGCAGCAGAACCGGCCCTCTGTGATTACCT
GTGCATCCGCGGGTGCCCGCAACTGCAACCTCTCTCACTGTCCCATCGCACACAGTGGCTGTTCTGCGCC
TGGGTCTGCCAGCTACCGGAGACCACCCAGTGCAACTGCCACCTGTGACCCTGTGGTGGAAGAGCACTTC
CGTCGGAGCCTGGGCAAGAACTACAAGGAGCCAGAGCCGGCGCCTAACTCGGTGTCCATCACTGGCTCAG
TGGATGACCACTTTGCCAAAGCACTAGGTGACACATGGCTTCAGATCAAAGCAGCCAAGGACAGCGCATC
CAGCAGCCCGGAGTCAGCCTCACGCAGGGGCCAGCCAGCCAGCCCCACTGCCCACATGGTCAGCCATAGT
CACTCCCCCTCTGTGGTCTCCTGA

Translation (287 aa):
MLFMKMDLLNYQYLDKMNNNIGVLCYEGEASLRGEPRMQTLPVASALSSHRTGPPPISPSKRKFSMEPGD
KDLDCENDHVSKMSRIFSPHLNKTVNGDCRRDPRERSRSPIERAAAPAVSLHGGHLYASLPSLMEQPLAL
TKNSSDTGRSAVERQQNRPSVITCASAGARNCNLSHCPIAHSGCSAPGSASYRRPPSATATCDPVVEEHF
RRSLGKNYKEPEPAPNSVSITGSVDDHFAKALGDTWLQIKAAKDSASSSPESASRRGQPASPTAHMVSHS
HSPSVVS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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