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Report for CCDS20454.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20454.1 Public Mus musculus 6 Or6d12 23 108 98 CCDS HistoryNCBI Gene:258019Re-query CCDS DB by CCDS ID:20454.1Re-query CCDS DB by GeneID:258019See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20454.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000075756.2 ENSMUSP00000075164.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000075756.2Link to Ensembl Protein Viewer:ENSMUSP00000075164.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000075756Re-query CCDS DB by Protein ID:ENSMUSP00000075164
Original member Current member EBI ENSMUST00000218028.1 ENSMUSP00000151377.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000218028.1Link to Ensembl Protein Viewer:ENSMUSP00000151377.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000218028Re-query CCDS DB by Protein ID:ENSMUSP00000151377
Original member Current member EBI ENSMUST00000220134.1 ENSMUSP00000151524.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000220134.1Link to Ensembl Protein Viewer:ENSMUSP00000151524.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000220134Re-query CCDS DB by Protein ID:ENSMUSP00000151524
Original member Current member NCBI NM_001011800.2 NP_001011800.1 Accepted alive Link to Nucleotide Sequence:NM_001011800.2Link to Protein Sequence:NP_001011800.1Re-query CCDS DB by Nucleotide ID:NM_001011800Re-query CCDS DB by Protein ID:NP_001011800Link to BLAST:NP_001011800.1

Chromosomal Locations for CCDS 20454.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 116515779 116516762 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (984 nt):
ATGGAACGGCTGACGGCAGAGGAAACAAGGAATGGGACATGGGTCCAGGAGTTTGTCCTTGAGGGGTTCC
CTGTGGCCGAGCACCTGAGGATCCTCTTCTTCCTGATGCACTTGCTGGCCTACTTGGCTTCCCTCATGGG
CAACACGCTCATAATTAGCATCACCTGCTTGGACCACCGATTGCAGACGCCCATGTACTTCTTCCTCAGC
ACTTTCTCCTTTGTGGAGTGCTGTTTTATAACTACAGTTATCCCCCAGCTGCTCGCCATCTTTCTGTCAG
GGAGGCAAACCATCTCCTTTGTGGCTTGCTTCACACAGGCCTTTTTCTTTCTTTTCCTGGGAGCAACTGT
TTTTTACCTCCTGGCTGTCTTATCCCTGGATCGCTATCTGGCCATCTGCAAACCTCTACATTATCCAACC
ATCATGAGCCCAAGGATGTGCTTTCTCCTTGTTACTGTGTGCTTAGCTTTGGGATTCCTCTTCATGGCTG
GTCCAGTTGTGATGCTTTCCCAGTCATCCTACTGTGGCCCCAATGTTATTCCTCACTTTTTCTGTGATTT
TGGGCCACTGGCAAATCTCTCATGTTTAGATACCAGGTCGGTTGAGATGCTATTTTTTAACCTTGCATTA
ATTGTGCTTTTTGGTTCCCTTCTGGTAGCCATCTTTGCATACAGCAACATAGTGGTCACAATAGTGGGTC
TCCCTTCGGCCAGGGAGCAACAGAGAGCTTTTTCCACTTGTTCCTCTCATCTCATTGTCCTCTCTTTAAT
GTATGGCAGCTGTGTATTTATATACATGAAGCCAAAGCAGACAAGCAGGCTGGACACCAACCGAGAGGCT
GCTCTTGTGAACACGGTAGTGACACCCCTTCTGAACCCTGTTATCTACACCCTGAGAAACAAGCAGGTCC
ACCAGGCTCTGAGGGATGCACTGTCCAGGGTTAAATTACCCAGATTTCAGAGGAGCAATGCACCTTCCCT
TTGA

Translation (327 aa):
MERLTAEETRNGTWVQEFVLEGFPVAEHLRILFFLMHLLAYLASLMGNTLIISITCLDHRLQTPMYFFLS
TFSFVECCFITTVIPQLLAIFLSGRQTISFVACFTQAFFFLFLGATVFYLLAVLSLDRYLAICKPLHYPT
IMSPRMCFLLVTVCLALGFLFMAGPVVMLSQSSYCGPNVIPHFFCDFGPLANLSCLDTRSVEMLFFNLAL
IVLFGSLLVAIFAYSNIVVTIVGLPSAREQQRAFSTCSSHLIVLSLMYGSCVFIYMKPKQTSRLDTNREA
ALVNTVVTPLLNPVIYTLRNKQVHQALRDALSRVKLPRFQRSNAPSL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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