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Report for CCDS20483.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20483.1 Public Mus musculus 6 Hdhd5 23 108 98 CCDS HistoryNCBI Gene:214932Re-query CCDS DB by CCDS ID:20483.1Re-query CCDS DB by GeneID:214932See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20483.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000075303.6 ENSMUSP00000074775.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000075303.6Link to Ensembl Protein Viewer:ENSMUSP00000074775.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000075303Re-query CCDS DB by Protein ID:ENSMUSP00000074775
Original member Current member NCBI NM_144815.2 NP_659064.1 Accepted alive Link to Nucleotide Sequence:NM_144815.2Link to Protein Sequence:NP_659064.1Re-query CCDS DB by Nucleotide ID:NM_144815Re-query CCDS DB by Protein ID:NP_659064Link to BLAST:NP_659064.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_659064.1 419 Q91WM2 419 100% 0 0

Chromosomal Locations for CCDS 20483.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 120510135 120510462 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 120510631 120510819 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 120514398 120514572 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 120517050 120517080 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 120518444 120518537 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 120521194 120521306 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 120523406 120523609 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 120531167 120531292 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1260 nt):
ATGGCTGCGCTCGCCGGGTTAGGGGTTCTCGGCGCCGGGCGCCATCTGTGGAAACTGCCTGTGCGCCTGT
CTGCGGGGCTCCAGGGCTGCGGGCCCCGGAGGGGCTACATCGCGGGCAGCGCTGAGCGTTCTCCCACCTT
TGGCTTACTGTTCGACATTGATGGAGTGCTGGTTCGAGGCCACAGAGTGATCCCAGCTGCTCTGGAAGCA
TTCAGCAAGCTGGTAAACTCCCAGGGGCAGCTGAGGGTACCTGTGGTTTTTGTCACAAATGCTGGGAACA
TCTTGCAGCATAACAAAGCCCAGGAACTGTCAGACCTGCTGAGGTGCAAGGTGGATCCAGACCAAGTCAT
TCTCTCTCACAGCCCCATGAAGCTCTTCCTGCAGTACCACAGCAAACAGATGCTAGTGTCGGGGCAGGGG
CCCCTGGTGGAGAACGCCAGAGCACTAGGCTTCCAGAATGTGGTGACAATAGATGAGCTGCGGTTAGCCT
TCCCAGAGCTGGACATGGTGGACCTTCAGCGGCGGCCGAAGACCATGCGCCTGAGGAGTGACTTCCCTGC
CATTGAAGGGGTCCTCCTTCTTGGGGAGCCAGTCCGCTGGGAGACAAACCTGCAGCTGATTATGGATGTC
CTTCTTAGTAACGGCCACCCCGGAACTGGCCTGGCAACAGCTCCGTATCCCCACCTGCCTGTTCTGGCTA
GCAACATGGACCTCCTGTGGATGGCTGAAGCCAAGATGCCCAGGTTTGGTCATGGCACCTTTCTGCTTTG
CCTGGAAACCATCTACCGGAAAATAACAGGCAATGAGCTGAAATACGAGGGTCTGATGGGCAAACCCAGC
ATCCTTACTTACCAGTATGCAGAGGACGTGATCAGGCAGCAGGCTGAGAGGCGGGGCTGGGCCGCCCCCA
TCAGGAAGCTGTATGCTATAGGTGATAACCCTATGTCTGATGTCTACGGTGCCAACCTATTCCATCAGTA
CCTGCAAATGGCCAATCGTGGAGAGGAGGAACAGCAGACTGGTGGGCAACAGAAGCAGCGGCCTTCAGCA
ACCCAGAGTTGTGCTTCCATCCTGGTATGCACTGGCATATACAGTTCTCAGGACCCAGGCTCCCAAGTGC
CTCCTCCTGGAAGGAGAGAGCTTCCATTCCACGGACACCGAGACTTCAGCTTCAGTCCAGGGCTCCTAGA
AGCCTCCCACATTGTTCATGATGTAAACGAAGCTGTGCAGCTGGTTTTCCACCAGGAGGGTTGGGCTTGA

Translation (419 aa):
MAALAGLGVLGAGRHLWKLPVRLSAGLQGCGPRRGYIAGSAERSPTFGLLFDIDGVLVRGHRVIPAALEA
FSKLVNSQGQLRVPVVFVTNAGNILQHNKAQELSDLLRCKVDPDQVILSHSPMKLFLQYHSKQMLVSGQG
PLVENARALGFQNVVTIDELRLAFPELDMVDLQRRPKTMRLRSDFPAIEGVLLLGEPVRWETNLQLIMDV
LLSNGHPGTGLATAPYPHLPVLASNMDLLWMAEAKMPRFGHGTFLLCLETIYRKITGNELKYEGLMGKPS
ILTYQYAEDVIRQQAERRGWAAPIRKLYAIGDNPMSDVYGANLFHQYLQMANRGEEEQQTGGQQKQRPSA
TQSCASILVCTGIYSSQDPGSQVPPPGRRELPFHGHRDFSFSPGLLEASHIVHDVNEAVQLVFHQEGWA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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