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Report for CCDS20522.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20522.2 Public Mus musculus 6 C1s2 23 108 98 CCDS HistoryNCBI Gene:317677Re-query CCDS DB by CCDS ID:20522.2Re-query CCDS DB by GeneID:317677See the combined annotation on chromosome 6 in Sequence Viewer

Public Note for CCDS 20522.2
The coding region has been updated to extend the N-terminus to one that is supported by available conservation data: the update is conserved in mouse, rat, dog, horse, cow and pig, but not in primates and supported by homologous and paralogous C1s-A proteins. Furthermore, the use of an alternative upstream start codon does not diminish the prediction of the signal peptide per SignalP 3.0.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by CCDS collaboration)

Sequence IDs included in CCDS 20522.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000218020.1 ENSMUSP00000151642.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000218020.1Link to Ensembl Protein Viewer:ENSMUSP00000151642.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000218020Re-query CCDS DB by Protein ID:ENSMUSP00000151642
Original member Current member NCBI NM_173864.2 NP_776289.2 Accepted alive Link to Nucleotide Sequence:NM_173864.2Link to Protein Sequence:NP_776289.2Re-query CCDS DB by Nucleotide ID:NM_173864Re-query CCDS DB by Protein ID:NP_776289Link to BLAST:NP_776289.2

Chromosomal Locations for CCDS 20522.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 124625166 124625962 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 124626758 124626832 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 124627491 124627619 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 124628291 124628369 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 124628754 124628869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 124629999 124630152 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 124631018 124631217 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 124632062 124632187 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 124635015 124635192 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 124635482 124635689 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 124636027 124636049 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2085 nt):
ATGGGCAAATCGCCAGGGATGTGGTATTTGGTCCTGTTTTCTCTTTTGGCATCATTTTCTGCTGAGCCCA
CCATGCATGGGGAGATCCTGTCCCCTAACTATCCCCAGGCGTACCCCAATGACGTCGTGAAATCTTGGGA
CATTGAAGTCCCAGAGGGGTTTGGGATTCACCTTTACTTTACCCATGTGGACATAGAGCCGTCAGAGAGC
TGTGCATACGACTCAGTGCAGATAATCTCAGGAGGCATCGAGGAAGGGAGACTCTGTGGTCAGAGGACCA
GCAAGAGCCCCAACTCCCCCATTATAGAAGAGTTTCAGTTCCCATACAATAAACTTCAGGTGGTCTTTAC
CTCAGACTTCTCCATCGAAGAACAGTTTACCGGCTTTGCAGCATACTACACTGCCATAGACGTAAACGAA
TGCACAGATTTTACAGATGTCCCCTGTAGCCACTTCTGCAATAACTTCATTGGTGGATACTTCTGCTCCT
GTCCCCCAGAATACTTCCTCCATGATGACATGAGGAATTGTGGAGTCAACTGTAGTGGAGATGTGTTCAC
TGCCCTGATTGGGGAGATCTCAAGTCCCAATTATCCCAATCCATACCCGGAGAACTCAAGGTGTGAATAC
CAGATTCAACTGCAGGAGGGCTTCCAAGTGGTGGTGACGATGCAGAGAGAAGATTTTGATGTGGAGCCCG
CTGACTCAGAGGGGAACTGCCCTGACAGTTTAACTTTTGCTGCAAAAAACCAACAGTTTGGTCCTTACTG
TGGCGATGGGTTTCCTGGACCGCTAACTATTAGAACCCAGAGCAATACTCTCGGCATTGTCTTTCAAACT
GATCTAATGGGGCAAAAAAAGGGTTGGAAGCTTCGTTACCATGGAGATCCCATCTCCTGTCCTAAAGAAA
GCACTGCCAATTCTAATTGGGAGCCCGATAAGGCAAAATACGTGTTTAAAGATGTGGTGAAGATAACCTG
TGTGGACGGATTTGAAGTTGTGGAGGGACATGTTAGCTCTACTTCATACTATTCCACTTGTCAAAGCGAT
GGACAGTGGAGCAACTCCGGTCTAAAATGTCAACCTGTGTATTGTGGAATTCCAGATCCCATTGCGAATG
GTAAAGTTGAAGAGCCAGAGAATAGTGTGTTTGGTACTGTCATTCACTATACGTGTGAAGAGCCATATTA
CTACATGGAACATGAAGAAGGTGGGGAGTATCGATGTGCTGCAAATGGGAGATGGGTAAATGACCAGCTG
GGTATTGAGCTTCCAAGATGTATTCCAGTCTGTGGAGTACCCACCGAGCCCTTTCAAGTGCAGCAGAAGA
TATTCGGAGGACAACCTGCAAAGATTGAAAATTTTCCCTGGCAAGTCTTCTTTAATCACCCCACAGCTGG
TGGGGCTCTTATTAATGAGTACTGGGTGCTGACGGCCGCTCACGTTGTGGAGAAAAACTCCGACCCTTCA
ATGTATGCCGGGATCACGGCTTTGAGACTGGCTGACTTGGAAAATGCCCAGAGGCTCTACACCAAGCGTG
TGATTATTCATCCCGGCTGGAAGGAAGACGATGACCTAAACCCACGGACAAATTTTGACAATGACATTGC
CCTGGTCCAGCTGAAAGACCCTGTGAAAATGGGACCCAAGTTTTCCCCCATCTGCCTACCAGGCACCTCC
TCAGAGTACAACCTCTCACCGGGTGACATGGGGCTGATCTCAGGGTGGGGCAGAACAGAAAAGAGACTCC
ATGTTATCAACCTCAGAGGGGCAAAGGTACCGGTAACCTCTTTAGAAACCTGCAAACAGGTGAAAGAAGA
GAACCCCACAGCAAGGCCAGAGGACTATGTTATCACTGACAACATGATCTGTGCTGGTGAGAAGGGTGTT
GACAGCTGTAAAGGGGACAGTGGAGGGGCTTTTGCTTTCCAGGTCCCCAATGTCAAGGCCCCAAAATTCT
ATGTAGCTGGGTTGGTGTCTTGGGGAAAAAAGTGTGGGGCCTATGGGGTCTACACAAAGGTAAAGAATTA
TGTGGACTGGATCCTGAAAACTATGCAGGAGAATAGTGGGCCCAGGAAGGACTAA

Translation (694 aa):
MGKSPGMWYLVLFSLLASFSAEPTMHGEILSPNYPQAYPNDVVKSWDIEVPEGFGIHLYFTHVDIEPSES
CAYDSVQIISGGIEEGRLCGQRTSKSPNSPIIEEFQFPYNKLQVVFTSDFSIEEQFTGFAAYYTAIDVNE
CTDFTDVPCSHFCNNFIGGYFCSCPPEYFLHDDMRNCGVNCSGDVFTALIGEISSPNYPNPYPENSRCEY
QIQLQEGFQVVVTMQREDFDVEPADSEGNCPDSLTFAAKNQQFGPYCGDGFPGPLTIRTQSNTLGIVFQT
DLMGQKKGWKLRYHGDPISCPKESTANSNWEPDKAKYVFKDVVKITCVDGFEVVEGHVSSTSYYSTCQSD
GQWSNSGLKCQPVYCGIPDPIANGKVEEPENSVFGTVIHYTCEEPYYYMEHEEGGEYRCAANGRWVNDQL
GIELPRCIPVCGVPTEPFQVQQKIFGGQPAKIENFPWQVFFNHPTAGGALINEYWVLTAAHVVEKNSDPS
MYAGITALRLADLENAQRLYTKRVIIHPGWKEDDDLNPRTNFDNDIALVQLKDPVKMGPKFSPICLPGTS
SEYNLSPGDMGLISGWGRTEKRLHVINLRGAKVPVTSLETCKQVKEENPTARPEDYVITDNMICAGEKGV
DSCKGDSGGAFAFQVPNVKAPKFYVAGLVSWGKKCGAYGVYTKVKNYVDWILKTMQENSGPRKD


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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