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Report for CCDS20549.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20549.1 Public Mus musculus 6 Ltbr 23 108 98 CCDS HistoryNCBI Gene:17000Re-query CCDS DB by CCDS ID:20549.1Re-query CCDS DB by GeneID:17000See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20549.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000032489.7 ENSMUSP00000032489.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000032489.7Link to Ensembl Protein Viewer:ENSMUSP00000032489.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000032489Re-query CCDS DB by Protein ID:ENSMUSP00000032489
Original member NCBI NM_010736.4 NP_034866.1 Updated not alive Link to Nucleotide Sequence:NM_010736.4Link to Protein Sequence:NP_034866.1Re-query CCDS DB by Nucleotide ID:NM_010736Re-query CCDS DB by Protein ID:NP_034866
Current member NCBI NM_010736.5 NP_034866.1 Accepted alive Link to Nucleotide Sequence:NM_010736.5Link to Protein Sequence:NP_034866.1Re-query CCDS DB by Nucleotide ID:NM_010736Re-query CCDS DB by Protein ID:NP_034866Link to BLAST:NP_034866.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034866.1 415 P50284 415 100% 0 0

Chromosomal Locations for CCDS 20549.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 125307230 125307471 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 125307930 125308146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 125309194 125309219 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 125309459 125309566 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 125312043 125312122 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 125312270 125312366 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 125312752 125312910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 125312994 125313119 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 125313390 125313486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 125313590 125313685 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1248 nt):
ATGCGCCTGCCCCGGGCCTCCTCTCCCTGCGGCCTGGCCTGGGGGCCACTCCTGCTGGGACTCAGCGGGC
TTCTGGTGGCCTCTCAGCCCCAGCTGGTGCCCCCTTATCGCATAGAAAACCAGACTTGCTGGGACCAGGA
CAAGGAATACTACGAGCCCATGCACGACGTCTGCTGCTCCCGCTGTCCCCCAGGCGAGTTTGTCTTTGCG
GTATGCAGCCGCAGCCAAGACACGGTTTGCAAGACTTGCCCCCATAATTCCTATAATGAACACTGGAACC
ATCTCTCCACCTGCCAGCTGTGCCGCCCCTGTGACATTGTGCTGGGCTTTGAGGAGGTTGCCCCTTGCAC
CAGCGATCGGAAAGCCGAGTGCCGCTGTCAGCCGGGGATGTCCTGTGTGTATCTGGACAATGAGTGTGTG
CACTGTGAGGAGGAGCGGCTTGTACTCTGCCAGCCTGGCACAGAAGCCGAGGTCACAGATGAAATTATGG
ATACTGACGTCAACTGTGTCCCCTGTAAGCCGGGACACTTCCAGAACACTTCCTCCCCTCGAGCCCGCTG
TCAACCCCATACCAGATGTGAGATCCAGGGCCTGGTGGAGGCAGCTCCAGGTACCTCCTACTCGGATACC
ATCTGTAAAAATCCCCCAGAGCCAGGAGCAATGCTACTGCTGGCCATCCTGCTGTCGCTGGTCCTCTTTC
TGCTCTTCACCACTGTCCTGGCCTGTGCCTGGATGAGGCACCCGTCTCTCTGCAGAAAGCTGGGTACTCT
GCTCAAGCGGCACCCAGAGGGAGAAGAATCTCCCCCTTGCCCCGCTCCAAGAGCCGACCCACATTTCCCT
GACCTGGCAGAGCCACTCCTACCCATGTCTGGAGACTTGTCCCCATCCCCTGCTGGACCCCCAACGGCCC
CCTCCTTGGAGGAAGTGGTGCTACAACAGCAGAGTCCCCTGGTCCAGGCCAGAGAGCTGGAGGCTGAACC
TGGGGAACATGGCCAGGTGGCCCACGGTGCGAATGGCATTCATGTGACCGGGGGCTCTGTGACTGTCACC
GGCAACATCTACATATACAATGGGCCAGTGCTGGGGGGAACACGGGGCCCTGGAGACCCTCCAGCTCCCC
CTGAGCCTCCATACCCCACTCCTGAAGAGGGAGCTCCTGGCCCTTCTGAGCTGTCTACACCCTACCAGGA
GGATGGCAAAGCTTGGCATCTGGCCGAGACAGAGACACTAGGATGCCAAGACCTCTGA

Translation (415 aa):
MRLPRASSPCGLAWGPLLLGLSGLLVASQPQLVPPYRIENQTCWDQDKEYYEPMHDVCCSRCPPGEFVFA
VCSRSQDTVCKTCPHNSYNEHWNHLSTCQLCRPCDIVLGFEEVAPCTSDRKAECRCQPGMSCVYLDNECV
HCEEERLVLCQPGTEAEVTDEIMDTDVNCVPCKPGHFQNTSSPRARCQPHTRCEIQGLVEAAPGTSYSDT
ICKNPPEPGAMLLLAILLSLVLFLLFTTVLACAWMRHPSLCRKLGTLLKRHPEGEESPPCPAPRADPHFP
DLAEPLLPMSGDLSPSPAGPPTAPSLEEVVLQQQSPLVQARELEAEPGEHGQVAHGANGIHVTGGSVTVT
GNIYIYNGPVLGGTRGPGDPPAPPEPPYPTPEEGAPGPSELSTPYQEDGKAWHLAETETLGCQDL


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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