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Report for CCDS20565.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20565.1 Public Mus musculus 6 Parp11 23 108 98 CCDS HistoryNCBI Gene:101187Re-query CCDS DB by CCDS ID:20565.1Re-query CCDS DB by GeneID:101187See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20565.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000039680.6 ENSMUSP00000036127.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000039680.6Link to Ensembl Protein Viewer:ENSMUSP00000036127.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000039680Re-query CCDS DB by Protein ID:ENSMUSP00000036127
Original member Current member NCBI NM_181402.4 NP_852067.1 Accepted alive Link to Nucleotide Sequence:NM_181402.4Link to Protein Sequence:NP_852067.1Re-query CCDS DB by Nucleotide ID:NM_181402Re-query CCDS DB by Protein ID:NP_852067Link to BLAST:NP_852067.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_852067.1 331 Q8CFF0-1 331 100% 0 0

Chromosomal Locations for CCDS 20565.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 127470705 127470830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 127471548 127471668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 127474236 127474311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 127477844 127477916 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 127477999 127478129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 127489926 127490077 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 127491419 127491735 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (996 nt):
ATGTTTCACAAGACAGAGGAGTTCTTTCCCAAGAAGACAGACAGCGATGTGGACGACATGGACACATCGG
ACACACAGTGGGGCTGGTTCTACCTGGCGGAATGTGGGAAGTGGCACATGTTTCAGCCGGATACCAACAT
TCAATGTTCAGTTAGCAGTGAAGATATCGAAAAAAGCTTCAAAACAAACCCTTGTGGCTCCATTTCCTTT
ACTACTTCCAAATTCAGCTACAAGATAGACTTTGCAGAAATGAAGCAGATGAATCTTGTCACTGGGAAAC
AGCGCCTAATAAAGAGGGCTCCTTTCTCCATCAGTGCCTTCAGTTACATCTGTGAGAATGAGGCCATCCC
CATGCCAACCCACTGGGAGAACGTGAACCCTGACGTTCCCTACCAGCTGGTTTCCCTGCAGAACCAGACG
CACGAGTATAATGAAGTGGCCAGTCTTTTTGGGAAAACAATGGATCGGAACCGAATTAAAAGGATTCAAA
GGATCCAAAACTTAGACTTATGGGAGTTCTTTTGCAGGAAAAAGGCTCAGCTCAAGAAAAAGAGAGGTGT
CCCCCAGATCAATGAGCAGATGCTATTTCATGGCACCAGCAGTGAATTTGTGGAAGCAATTTGCATTCAC
AACTTTGACTGGAGAATCAATGGTGTGCACGGGGCTGTCTTTGGAAAAGGAACCTATTTCGCTAGAGATG
CTGCGTACTCCAGTCGTTTCTGCAAAGATGACATCAAGCACGGGAACACATTCCAGATTCATGGGGTCAG
CTTGCAGCAGCGACATCTGTTCAGAACCTATAAATCCATGTTTCTTGCTCGAGTGCTAATTGGTGATTAC
ATAAATGGAGACTCGAAATACATGAGACCTCCTTCCAAAGACGGGAGCTATGTGAATTTGTATGACAGCT
GTGTGGATGACACCTGGAACCCAAAGATCTTTGTGGTTTTTGATGCCAACCAGATCTACCCTGAGTACCT
GATAGACTTCCACTGA

Translation (331 aa):
MFHKTEEFFPKKTDSDVDDMDTSDTQWGWFYLAECGKWHMFQPDTNIQCSVSSEDIEKSFKTNPCGSISF
TTSKFSYKIDFAEMKQMNLVTGKQRLIKRAPFSISAFSYICENEAIPMPTHWENVNPDVPYQLVSLQNQT
HEYNEVASLFGKTMDRNRIKRIQRIQNLDLWEFFCRKKAQLKKKRGVPQINEQMLFHGTSSEFVEAICIH
NFDWRINGVHGAVFGKGTYFARDAAYSSRFCKDDIKHGNTFQIHGVSLQQRHLFRTYKSMFLARVLIGDY
INGDSKYMRPPSKDGSYVNLYDSCVDDTWNPKIFVVFDANQIYPEYLIDFH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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