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Report for CCDS20579.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20579.1 Public Mus musculus 6 Klrb1f 23 108 98 CCDS HistoryNCBI Gene:232408Re-query CCDS DB by CCDS ID:20579.1Re-query CCDS DB by GeneID:232408See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20579.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000032257.9 ENSMUSP00000032257.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000032257.9Link to Ensembl Protein Viewer:ENSMUSP00000032257.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000032257Re-query CCDS DB by Protein ID:ENSMUSP00000032257
Original member Current member NCBI NM_153094.2 NP_694734.1 Accepted alive Link to Nucleotide Sequence:NM_153094.2Link to Protein Sequence:NP_694734.1Re-query CCDS DB by Nucleotide ID:NM_153094Re-query CCDS DB by Protein ID:NP_694734Link to BLAST:NP_694734.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_694734.1 217 Q8VD98 217 100% 0 0

Chromosomal Locations for CCDS 20579.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 129045948 129046032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 129052459 129052557 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 129053183 129053257 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 129053712 129053866 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 129054256 129054371 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 129056341 129056464 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (654 nt):
ATGGACACATCAAAGGTCCATGGCAATGTAAAGCCATTTAGGTGTCCAGGGTATAAGCAAGCATCTTCTC
CATCTTTCTCCCCAGATGCTTGTCGGTGCCCACACTGGCATCATTTGGCTCTGAAATCTGGCTGTGCTGG
GCTGATCCTTCTTCTCTTGAGCCTGATTGGACTCAGTGTCTTAGTGAGATTCCTAGTGCAAAAACCACCA
ATAGAAAAATGCAGTGTGGCTGCTCAAGAGAACAGGACTGAACTAACAGGAAGATCAGCCATACTAGAGT
GCCCGAGATATTGGCATCCACACTGGAACAAATGTTTATTTGTTTCTCAAATTTCCAGACCTTGGGCAGA
AGGTCGAGATGCCTGCTCTATGGAAGACGCCATTTTGTTGCTCATTGAAAATAAAGAAGAACTGAGATTT
GTGCAGAACTTGATAAAGGGAAAAGAACAGTTATTTTTTATTGGACTAAAATATGTACAGAAGGAGAAGA
TCTGGAAGTGGATAGATGGCTCTATTTTAAATCCTAACCTATTACGAATCACTGGCAAGGACAAAGAAAA
CAGCTGTGCCATCATCTCACACACGGAAGTGTTTTCAGATTCTTGTTCTTCAGACAACCACTGGATCTGC
CAAAAGACCCTGATACATGTCTGA

Translation (217 aa):
MDTSKVHGNVKPFRCPGYKQASSPSFSPDACRCPHWHHLALKSGCAGLILLLLSLIGLSVLVRFLVQKPP
IEKCSVAAQENRTELTGRSAILECPRYWHPHWNKCLFVSQISRPWAEGRDACSMEDAILLLIENKEELRF
VQNLIKGKEQLFFIGLKYVQKEKIWKWIDGSILNPNLLRITGKDKENSCAIISHTEVFSDSCSSDNHWIC
QKTLIHV


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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