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Report for CCDS20583.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20583.1 Public Mus musculus 6 Clec2m 23 108 98 CCDS HistoryNCBI Gene:381816Re-query CCDS DB by CCDS ID:20583.1Re-query CCDS DB by GeneID:381816See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20583.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000051283.7 ENSMUSP00000062024.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000051283.7Link to Ensembl Protein Viewer:ENSMUSP00000062024.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000051283Re-query CCDS DB by Protein ID:ENSMUSP00000062024
Original member Current member NCBI NM_199034.4 NP_950199.1 Accepted alive Link to Nucleotide Sequence:NM_199034.4Link to Protein Sequence:NP_950199.1Re-query CCDS DB by Nucleotide ID:NM_199034Re-query CCDS DB by Protein ID:NP_950199Link to BLAST:NP_950199.1

Chromosomal Locations for CCDS 20583.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 129322944 129323058 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 129325608 129325717 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 129326656 129326843 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 129330948 129331034 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 129331495 129331564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (570 nt):
ATGCAGACCGACACTTCACCCAGACTACCTCAGACAAGCCATGAACGCAGGCATCACAGGTTAATGTTCG
ATGCGAAGAAAGTGCTGACCCTTTGGACCCTGCTAGGAGGTGCTGTTGCTGTTCTTCTTTGGGGGTTTTT
CAGTTTTCCTAGAAAATTTACAGTTACAAGAACAGCCAGAAACAAGACATGTGACGACGAGGTAAAGCTG
TGCCCTAAAGACTGGAACAAACTACGTCAGAACTGCTTCTCTCGTATCCAACATAAAAACTCGTGGCTTA
CTGCCAACGACACCTGCGAACTCCATGATGCAACTCTGGCTGTGTTCATCGACAAAACTGAAGTGGAAAT
TTTGATGAATCAAATACAGGAGATGAAAACATATTGGATTGGACTGCACAGACAAAATTTATTAGGAATC
TGGGTTTGGACAAATGGAAGTAAATACAACAATTTGCATGAGATCCAAGATCATGGTCAGTGTGCCTTCG
TGCATCAAAAGGGCATAGACAGTACCAGTTGTGAGGATCAAAAAGAATTTATTTGTACCAGAGAAGGCCA
GTGCCCTTGA

Translation (189 aa):
MQTDTSPRLPQTSHERRHHRLMFDAKKVLTLWTLLGGAVAVLLWGFFSFPRKFTVTRTARNKTCDDEVKL
CPKDWNKLRQNCFSRIQHKNSWLTANDTCELHDATLAVFIDKTEVEILMNQIQEMKTYWIGLHRQNLLGI
WVWTNGSKYNNLHEIQDHGQCAFVHQKGIDSTSCEDQKEFICTREGQCP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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