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Report for CCDS20677.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20677.1 Public Mus musculus 6 Slco1c1 23 108 98 CCDS HistoryNCBI Gene:58807Re-query CCDS DB by CCDS ID:20677.1Re-query CCDS DB by GeneID:58807See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 20677.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000032362.11 ENSMUSP00000032362.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000032362.11Link to Ensembl Protein Viewer:ENSMUSP00000032362.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000032362Re-query CCDS DB by Protein ID:ENSMUSP00000032362
Original member Current member NCBI NM_021471.3 NP_067446.1 Accepted alive Link to Nucleotide Sequence:NM_021471.3Link to Protein Sequence:NP_067446.1Re-query CCDS DB by Nucleotide ID:NM_021471Re-query CCDS DB by Protein ID:NP_067446Link to BLAST:NP_067446.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_067446.1 715 Q9ERB5 715 100% 0 0

Chromosomal Locations for CCDS 20677.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 141531478 141531606 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 141532642 141532783 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 141539180 141539312 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 141540050 141540183 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 141542092 141542238 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 141544733 141544831 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 141546677 141546922 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 141547770 141547934 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 141554992 141555187 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 141559741 141559906 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 141563026 141563210 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 141564515 141564579 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 141567454 141567571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 141569306 141569528 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2148 nt):
ATGGACACCTCATCCAAAGAAAATGCCCATTTGTTCCACAAAAATTCAGCGCAACCTGCCGGAGGGCCAT
CCTTTACAGTCGGATATCCGTCCACAGAGGAAGCGCGGCCATGCTGTGGAAAACTCAAGGTGTTCTTGGG
TGCCCTGTCGTTTGTTTACTTTGCCAAAGCATTGGCAGAAGGCTATCTGAAGAGCACCGTGACTCAGATA
GAGAGAAGGTTTGAGATCCCTTCCTCTCTGGTGGGAATAATTGATGGTAGTTTTGAAATCGGGAATCTCC
TGGTCATAACGTTTGTTAGCTACTTTGGTGCCAAACTTCACAGGCCAAAAATAATTGGAGCAGGATGCCT
GGTCATGGGCTTCGGAACTATGCTCATTGCTGTACCCCAGTTCTTCATGGAGAAGTACAGCTATGAGAAA
TATGAGAGGTATTCCCCGTCCTCCAATGTTACTCCCAGCATCTCTCCGTGCTACCTGGAGTCCAGCAGTC
CATCACCAAGCTCAATCCTGGGGAAATCACAGAACAAAATAAGTCACGAATGTGTAGGGGATTCCAGCTC
CTCCATGTGGGTTTATGTCTTCCTGGGAAATCTTCTCCGAGGGTTAGGGGAGACGCCTATCCAACCCCTG
GGCATCGCCTATCTGGATGACTTTGCCAGTGAAGACAATGCTGCTTTCTACATCGGGTGTGTGCAGACAG
TGGCAATTATAGGACCCATTTTTGGCTTCCTTTTGGGCTCATTATGCGCAAAACTGTATGTTGATATTGG
CTTTGTGAATCTAGACCATATAACAATCACCCCAAAGGATCCTCAGTGGGTCGGGGCCTGGTGGCTTGGT
TACCTAATAGCTGGATTCCTAAGTCTCCTTGCAGCTGTTCCTTTCTGGTGCTTACCCAAGACTCTACCAA
GATCCCAAAGTAGAGAGAACTCTGGCTCCACATCTGAGAAATCCAAGTTCATAGATGACCCTATTCACTA
CCAAATGGCCCCTGGAGACGATAAAATGAAAATCATGGAAATGGCAAAAGATTTTCTTCCATCATTGAAG
ACTCTTTTTAGAAATCCAGTATACATCTTATACTTGTGTGCAAGCACCGTTCAGTTCAATTCTCTATTTG
GCATGGTCACATATAAACCAAAATACATTGAGCAGCAGTATGGGCAGTCTTCTTCCAAAGCCAACTTTGT
CATTGGGCTCATCAACATTCCTGCAGTGGCCCTTGGAATATTCTCTGGGGGAATAGTTATGAAAAAATTC
AGGCTGGGTATTTGTGAAGCTACAAAACTCTACTTGGGATCATCTGTCTTTGGCTACCTCCTCTTCCTCT
CTCTGTTTGCACTGGGATGTGAAAATTCTAGTGTGGCCGGACTGACTGTCTCCTACCAAGGAACCAAACC
TGTCTCTTATCATGAACGAGCTCTCTTTTCAGATTGCAACTCAAGATGTAAATGTTCAGACTCAAAATGG
GAGCCCATGTGTGGGGACAATGGGATTACCTATGTGTCGGCTTGTCTTGCTGGCTGTCAATCCTCCAGCC
GGAGTGGAAAGAACATTATATTTTCTAACTGCACTTGTGTGGGATTTGCAGCCCCCAAGTCAGGAAACTG
GTCAGGCATGATGGGCAGGTGTCAGAAAGATAATGGATGTTCCCAAATGTTTCTTTATTTCCTTGTGATT
TCAGTCATCACATCATATACATTATCTCTAGGTGGCATACCTGGATATATATTACTCTTGAGGTGCATTC
AACCACAACTTAAGTCTTTTGCTCTGGGTATCTACACCTTAGCAGTAAGAGTTCTTGCAGGAATCCCAGC
CCCTGTGTACTTTGGTGTTTTGATTGACACTTCATGCCTCAAATGGGGATTTAAGAAATGTGGAAGCAGA
GGCTCCTGCAGGCTGTATGACTCCCACGCTTTCAGACACATATACCTGGGATTAACCACGCTCCTGGGCA
CGGTGTCTGTCTTCCTAAGCATGGCTGTACTTTTTGTTTTAAAGAAAAAATATGTCTCGAAACACAGCAG
CTTAATAACCACAAGAGAAAAAATAGGGATGTCTTCAAGCATCAAAAAGGAGACATGCGCTGCAAGGGAT
CGTGGATTGCAGCCCAAGTACTGGCCAGGCAAGGAGACACGACTTTAA

Translation (715 aa):
MDTSSKENAHLFHKNSAQPAGGPSFTVGYPSTEEARPCCGKLKVFLGALSFVYFAKALAEGYLKSTVTQI
ERRFEIPSSLVGIIDGSFEIGNLLVITFVSYFGAKLHRPKIIGAGCLVMGFGTMLIAVPQFFMEKYSYEK
YERYSPSSNVTPSISPCYLESSSPSPSSILGKSQNKISHECVGDSSSSMWVYVFLGNLLRGLGETPIQPL
GIAYLDDFASEDNAAFYIGCVQTVAIIGPIFGFLLGSLCAKLYVDIGFVNLDHITITPKDPQWVGAWWLG
YLIAGFLSLLAAVPFWCLPKTLPRSQSRENSGSTSEKSKFIDDPIHYQMAPGDDKMKIMEMAKDFLPSLK
TLFRNPVYILYLCASTVQFNSLFGMVTYKPKYIEQQYGQSSSKANFVIGLINIPAVALGIFSGGIVMKKF
RLGICEATKLYLGSSVFGYLLFLSLFALGCENSSVAGLTVSYQGTKPVSYHERALFSDCNSRCKCSDSKW
EPMCGDNGITYVSACLAGCQSSSRSGKNIIFSNCTCVGFAAPKSGNWSGMMGRCQKDNGCSQMFLYFLVI
SVITSYTLSLGGIPGYILLLRCIQPQLKSFALGIYTLAVRVLAGIPAPVYFGVLIDTSCLKWGFKKCGSR
GSCRLYDSHAFRHIYLGLTTLLGTVSVFLSMAVLFVLKKKYVSKHSSLITTREKIGMSSSIKKETCAARD
RGLQPKYWPGKETRL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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