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Report for CCDS20748.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20748.1 Public Mus musculus 7 Isoc2b 23 108 98 CCDS HistoryNCBI Gene:67441Re-query CCDS DB by CCDS ID:20748.1Re-query CCDS DB by GeneID:67441See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 20748.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000064547.12 ENSMUSP00000066859.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000064547.12Link to Ensembl Protein Viewer:ENSMUSP00000066859.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000064547Re-query CCDS DB by Protein ID:ENSMUSP00000066859
Original member Current member EBI ENSMUST00000208816.1 ENSMUSP00000147085.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000208816.1Link to Ensembl Protein Viewer:ENSMUSP00000147085.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000208816Re-query CCDS DB by Protein ID:ENSMUSP00000147085
Original member Current member NCBI NM_026158.2 NP_080434.1 Accepted alive Link to Nucleotide Sequence:NM_026158.2Link to Protein Sequence:NP_080434.1Re-query CCDS DB by Nucleotide ID:NM_026158Re-query CCDS DB by Protein ID:NP_080434Link to BLAST:NP_080434.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080434.1 210 Q9DCC7 210 100% 0 0

Chromosomal Locations for CCDS 20748.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 4845270 4845365 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 4849450 4849567 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 4850755 4850825 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 4851024 4851233 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 4851393 4851530 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (633 nt):
ATGGGAGCAGCCAAAGCTAGCCTCGGCCGGATCTTCCCAGAGTCCTCCATCCTGTTCCTATGTGACATGC
AGGAGAAACTTCGAGATAGAATCCTCTACTTCCCACAGATCGTGTCAAAGGCCGCTCGGATGCTTAAGGT
AGCCCAGATGCTAGAAATCCCCGTCTTGCTGACAGAGCATTACCCACAAGGTCTGGGCCCCACAGTTCCC
GAGCTGGGTGCTCAGGGTCTGCGAACCATGAGCAAAACGTCCTTCAGCATGGTGCCCCCGCTTCAACAGG
AGTTGGACAAACTGCCCCAGCTGCAGTCCGTGCTACTCTGTGGCATTGAGACCCAAGGCTGCATCTTGCA
CACAGCTCTGGACCTCCTGGACCGTGGGCTACAGGTTCATGTAGCAGTGGATGCCTGTTCTTCTCAAAGT
GAGATGAACCGGCTCGTGGCACTGGCCCGAATGCAGCAGAGTGGCGTCTTTCTGTCCACGAGCGAGGTGC
TGATTCTCCAGCTGGTGAAGGATGCTGCCCACCCACAGTTCAAGGAGATTCAGAAGATCCTCAAGGAGCC
AGTCACAGACATCGGACTGTTAGGCTTCTTCCAAGGCAAGAAAAACTCCCTGTTGCCCAACTCCAGGACC
TGA

Translation (210 aa):
MGAAKASLGRIFPESSILFLCDMQEKLRDRILYFPQIVSKAARMLKVAQMLEIPVLLTEHYPQGLGPTVP
ELGAQGLRTMSKTSFSMVPPLQQELDKLPQLQSVLLCGIETQGCILHTALDLLDRGLQVHVAVDACSSQS
EMNRLVALARMQQSGVFLSTSEVLILQLVKDAAHPQFKEIQKILKEPVTDIGLLGFFQGKKNSLLPNSRT


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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